feat (MedCAT): CU-869auz1ck Add a bulk CUI removal method for the CDB #175
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When trying to remove a bunch of CUIs at once, the
CDB.remove_cui
method is quite slow because it's resetting the subnames every time.The issue is that there's nothing mapping subnames to the CUIs so at removal of a CUI the model can't tell whether / which subnames need to be removed. As such, they're regenerated from scratch every time.
This PR adds a
CDB.remove_cuis_bulk
method that calls_reset_subnames
once instead.