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CU-8699j87ej Fix further links (and add logo) #7

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552f422
CU-8699j87ej: Update links in README
mart-r Jun 25, 2025
d12ada9
CU-8699j87ej: Update links in docs
mart-r Jun 25, 2025
3ff8999
Merge branch 'main' into CU-8699j87ej-fix-links
mart-r Jun 26, 2025
004d752
CU-8699j87ej: Fix logo link in docs.
mart-r Jun 26, 2025
22df585
CU-8699j87ej: Add logo to v2 folder
mart-r Jun 26, 2025
89ee93e
CU-8699j87ej: Move to log in the v2 folder of this repo
mart-r Jun 26, 2025
33f9098
CU-8699j87ej: Update build and release status in README to point to m…
mart-r Jun 26, 2025
5106527
CU-8699j87ej: Update latest release link in docs as well
mart-r Jun 26, 2025
37f1beb
CU-8699j87ej: Moved logo files to a hidden folder
mart-r Jun 26, 2025
76fb2e0
CU-8699j87ej: Fix references to media files in docs / readme
mart-r Jun 26, 2025
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Binary file added medcat-v2/.media/cat-logo.png
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73 changes: 73 additions & 0 deletions medcat-v2/.media/cat-logo.svg
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6 changes: 3 additions & 3 deletions medcat-v2/README.md
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@@ -1,11 +1,11 @@
# Medical <img src="https://raw.githubusercontent.com/CogStack/MedCAT/main/media/cat-logo.png" width=45> oncept Annotation Tool (version 2)
# Medical <img src="https://github.com/CogStack/cogstack-nlp/blob/main/medcat-v2/.media/cat-logo.png" width=45> oncept Annotation Tool (version 2)

**There's a number of breaking changes in MedCAT v2 compared to v1.**
Details are outlined [here](docs/breaking_changes.md).

[![Build Status](https://github.com/CogStack/MedCAT2/actions/workflows/main.yml/badge.svg?branch=main)](https://github.com/CogStack/MedCAT2/actions/workflows/main.yml?query=branch%3main)
[![Build Status](https://github.com/CogStack/cogstack-nlp/actions/workflows/medcat-v2_main.yml/badge.svg?branch=main)](https://github.com/CogStack/cogstack-nlp/actions/workflows/medcat-v2_main.yml?query=branch%3main)
[![Documentation Status](https://readthedocs.org/projects/medcat2/badge/?version=latest)](https://medcat2.readthedocs.io/en/latest/?badge=latest)
[![Latest release](https://img.shields.io/github/v/release/CogStack/MedCAT2)](https://github.com/CogStack/MedCAT2/releases/latest)
[![Latest release](https://img.shields.io/github/v/release/CogStack/cogstack-nlp)](https://github.com/CogStack/cogstack-nlp/releases/latest)
<!-- [![pypi Version](https://img.shields.io/pypi/v/medcat.svg?style=flat-square&logo=pypi&logoColor=white)](https://pypi.org/project/medcat/) -->

MedCAT can be used to extract information from Electronic Health Records (EHRs) and link it to biomedical ontologies like SNOMED-CT, UMLS, or HPO (and potentially other ontologies).
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2 changes: 1 addition & 1 deletion medcat-v2/docs/conf.py
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Expand Up @@ -75,7 +75,7 @@
'css/overrides.css'
]

html_logo = '../media/cat-logo.svg'
html_logo = '../.media/cat-logo.svg'

html_theme_options = {
'display_version': True,
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6 changes: 3 additions & 3 deletions medcat-v2/docs/main.md
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@@ -1,12 +1,12 @@
# Medical <img src="https://github.com/CogStack/cogstack-nlp/blob/main/medcat-v2/media/cat-logo.png?raw=true" width=45>oncept Annotation Tool (v2)
# Medical <img src="https://github.com/CogStack/cogstack-nlp/blob/main/medcat-v2/.media/cat-logo.png?raw=true" width=45>oncept Annotation Tool (v2)

**There's a number of breaking changes in MedCAT v2 compared to v1.**
Details are outlined [here](breaking_changes.md).

[![Build Status](https://github.com/CogStack/cogstack-nlp/actions/workflows/medcat-v2_main.yml)](https://github.com/CogStack/cogstack-nlp/actions/workflows/medcat-v2_main.yml)
[![Documentation Status](https://readthedocs.org/projects/medcat2/badge/?version=latest)](https://medcat2.readthedocs.io/en/latest/?badge=latest)
[![Latest release](https://img.shields.io/github/v/release/CogStack/MedCAT2)](https://github.com/CogStack/MedCAT2/releases/latest)
[![pypi Version](https://img.shields.io/pypi/v/medcat.svg?style=flat-square&logo=pypi&logoColor=white)](https://pypi.org/project/medcat/)
[![Latest release](https://img.shields.io/github/v/release/CogStack/cogstack-nlp)](https://github.com/CogStack/cogstack-nlp/releases/latest)
<!-- [![pypi Version](https://img.shields.io/pypi/v/medcat.svg?style=flat-square&logo=pypi&logoColor=white)](https://pypi.org/project/medcat/) -->

MedCAT(*v2*) can be used to extract information from Electronic Health Records (EHRs) and link it to biomedical ontologies like SNOMED-CT and UMLS. Paper on [arXiv](https://arxiv.org/abs/2010.01165).

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