Develop ~~> Main v0.13.0

[garrettwrong]

Draft release notes below

ASPIRE v0.13.0 is minor release, adding new scientific features, GPU basis acceleration, updates and bug fixes.

This release provides the following features:

• CLSync3N Common Lines algorithm
• CLSymmetryD2 Common Lines algorithm
• GPU Acceleration of FFBBasis2D and FLEBasis2D
• GPU Acceleration of FFBBasis3D
• Pixel size attributes for Image, Volume, and ImageSource
• Optimized spherical harmonic computations
• Adds Sinogram GPU accelerated line projection class

Bug fixes:

• Reconcile rotation estimation with legacy MATLAB
• Reconcile shift estimation with legacy MATLAB
• Fix fuzzy_mask defaults and adds low pixel patch
• Relion/ASPIRE image offset conventions
• whiten filter thresholds
• Remove FINUFFT workarounds for old releases
• SymmetryGroup pass-through
• wemd centering patch
• MeanEstimator defaults
• Minor 10081 gallery udpates

Testing:

• Long running workflow speedups (fixture reuse)
• Reduced batched covar2D test variability
• Warnings cleanup (Linux 3.8-3.11, M1 3.9)
• Adds initial tests for common line algorithms with shifts

Systems/CI Updates:

• Native Apple Silicon support
• Remove pyshtools dependency
• Adds OSX ARM CI platform
• FINUFFT/cuFINUFFT major release updates
• Update CodeCov Auth

[garrettwrong]

@j-c-c , time to begin testing :) 🚀

[codecov]

Codecov Report

Attention: Patch coverage is 80.37825% with 249 lines in your changes missing coverage. Please review.

Project coverage is 87.37%. Comparing base (dcedb21) to head (a01d211).
Report is 908 commits behind head on main.

Files with missing lines	Patch %	Lines
src/aspire/abinitio/commonline_sync3n.py	38.46%	240 Missing ⚠️
src/aspire/abinitio/commonline_d2.py	99.36%	5 Missing ⚠️
src/aspire/abinitio/sync_voting.py	94.11%	2 Missing ⚠️
src/aspire/nufft/cufinufft.py	0.00%	1 Missing ⚠️
src/aspire/sinogram/sinogram.py	90.90%	1 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main    #1188      +/-   ##
==========================================
- Coverage   88.93%   87.37%   -1.56%     
==========================================
  Files         127      131       +4     
  Lines       11471    13603    +2132     
==========================================
+ Hits        10202    11886    +1684     
- Misses       1269     1717     +448     

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[j-c-c]

🚀

[garrettwrong]

Merging.