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The source code for the new version of the EMBL-EBI BioSamples database
A sandbox with example pages from the MarRef database for Bioschemas hackathon purposes
A repository for structured data representation in BioSamples
A simple library to map Java objects and Java beans onto RDF/OWL
Allows you to define a project that produces the binary for a command-line based application, using the Assembly plug-in.
A simple parser for MarRef XML. Hoping to parse the XML records into JSON-LD to the BioSchemas standards.
Updated version of the Biosamples UI to work with a Solr backend
A web scraper to extract amr data from NCBI website
myequivalents is a system to manage cross-references between entities, which is compatible with URIs and the Semantic Web.
EBI BioSamples Solr Indexer
Command line tools to convert various biomedical formats into the SampleTab format, used by the EBI Biosamples Database.
An application to generate the xml specific for the EBI general search interface
various sample tab services
Annotates sample and sample group characteristics, such as organisms or age, with ontology terms obtained via the ZOOMA tool and number/date/range annotations, extracted via some text mining.
A project aiming "to significantly advance the state of the art with regard to indexing and querying biomedical data with freely available open source software"
A processor pluggable into solr core that try to fix UTF8 characters encoding problems
A repository to scrape biosamples finding all samples related to a specific owner
This component validates the data exported from BioSD to the solr index and reports any discrepancies that might exist.
A simple API to deal with discovery of ontology terms, based on text annotators, like Bioportal Annotator, or ZOOMA.
Defines a POM that you should include in your Maven projects, if they are BioSD-related
The BioSD Object Model
Most used topics