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Thomas Burton edited this page Aug 23, 2016 · 34 revisions

##Environment## Assuming a linux environment, it shouldn't matter too much which, but we've only developed/tested on recent versions of Ubuntu.

##Additional python modules## Over and above your base python install you will need to have the following

  • pyzotero
  • python-biopython
  • jsonpath-rw
  • python-requests
  • htmlentities
  • unicodecsv

All of which can be installed with pip, e.g.: sudo pip install pyzotero

##Grab the source code## Clone of download from https://github.com/OllyButters/papers

##API keys## Since we are using several APIs we need to register for a few of them and get some API keys.

Once you have these put them in the settings.ini file.

##Run it!## From the command line go to the /source directory and execute ./papers

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