GEOS-DEV · RomainBaville · Sep 19, 2025 · Sep 19, 2025 · Sep 22, 2025 · Sep 22, 2025
diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml
@@ -46,6 +46,7 @@ jobs:
           - geos-geomechanics
           - geos-mesh
           - geos-posp
+          - geos-processing
           - geos-timehistory
           - geos-trame
           - geos-xml-tools
@@ -57,8 +58,10 @@ jobs:
             dependencies: "geos-utils"
           - package-name: geos-mesh
             dependencies: "geos-utils geos-geomechanics"
-          - package-name: geos-posp
+          - package-name: geos-processing
             dependencies: "geos-utils geos-mesh geos-geomechanics"
+          - package-name: geos-posp
+            dependencies: "geos-utils geos-mesh geos-geomechanics geos-processing"
           - package-name: pygeos-tools
             dependencies: "geos-utils geos-mesh"
           - package-name: geos-timehistory

diff --git a/.github/workflows/typing-check.yml b/.github/workflows/typing-check.yml
@@ -1,5 +1,5 @@
 name: "Pull Request Typing Check"
-on: 
+on:
 - pull_request
 
 # Cancels in-progress workflows for a PR when updated
@@ -16,7 +16,7 @@ jobs:
       max-parallel: 3
       matrix:
         # add packages to check typing
-        package-name: ["geos-geomechanics", "geos-posp", "geos-timehistory", "geos-utils", "geos-trame", "geos-xml-tools", "hdf5-wrapper"]
+        package-name: ["geos-geomechanics", "geos-posp", "geos-processing", "geos-timehistory", "geos-utils", "geos-trame", "geos-xml-tools", "hdf5-wrapper"]
 
     steps:
     - uses: actions/checkout@v4

diff --git a/docs/conf.py b/docs/conf.py
@@ -17,7 +17,7 @@
 
 # Add python modules to be documented
 python_root = '..'
-python_modules = ( 'geos-ats', 'geos-geomechanics', 'geos-mesh', 'geos-posp', 'geos-pv', 'geos-timehistory',
+python_modules = ( 'geos-ats', 'geos-geomechanics', 'geos-mesh', 'geos-posp', 'geos-processing', 'geos-pv', 'geos-timehistory',
                    'geos-utils', 'geos-xml-tools', 'geos-xml-viewer', 'hdf5-wrapper', 'pygeos-tools' )
 
 
@@ -45,7 +45,7 @@
 # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
 # ones.
 extensions = [
-    'sphinx.ext.napoleon', 'sphinx_design', 'sphinx_rtd_theme', 'sphinxarg.ext', 'sphinxcontrib.programoutput', 
+    'sphinx.ext.napoleon', 'sphinx_design', 'sphinx_rtd_theme', 'sphinxarg.ext', 'sphinxcontrib.programoutput',
     'sphinx.ext.autodoc', 'sphinx.ext.doctest', 'sphinx.ext.mathjax', 'sphinx.ext.todo', 'sphinx.ext.viewcode'
 ]
 

diff --git a/docs/geos-processing.rst b/docs/geos-processing.rst
@@ -0,0 +1,13 @@
+GEOS Processing tools
+========================
+
+
+.. toctree::
+    :maxdepth: 5
+    :caption: Contents:
+
+    ./geos_processing_docs/post_processing.rst
+
+    ./geos_processing_docs/pre_processing.rst
+
+    ./geos_processing_docs/generic_processing_tools.rst
diff --git a/docs/geos_mesh_docs/processing.rst b/docs/geos_mesh_docs/processing.rst
@@ -27,7 +27,6 @@ geos.mesh.processing.FillPartialArrays filter
     :undoc-members:
     :show-inheritance:
 
-
 geos.mesh.processing.meshQualityMetricHelpers module
 -----------------------------------------------------
 

diff --git a/docs/geos_posp_docs/PVplugins.rst b/docs/geos_posp_docs/PVplugins.rst
@@ -34,13 +34,6 @@ PVExtractMergeBlocksVolumeWell plugin
 
 .. automodule:: PVplugins.PVExtractMergeBlocksVolumeWell
 
-
-PVGeomechanicsAnalysis plugin
----------------------------------------
-
-.. automodule:: PVplugins.PVGeomechanicsAnalysis
-
-
 PVGeomechanicsWorkflowVolume plugin
 ---------------------------------------------
 

diff --git a/docs/geos_posp_docs/filters.rst b/docs/geos_posp_docs/filters.rst
@@ -3,14 +3,6 @@ vtk Filters
 
 This package defines vtk filters that allows to process Geos outputs.
 
-geos_posp.filters.GeomechanicsCalculator module
----------------------------------------------------
-
-.. automodule:: geos_posp.filters.GeomechanicsCalculator
-   :members:
-   :undoc-members:
-   :show-inheritance:
-
 geos_posp.filters.GeosBlockExtractor module
 -----------------------------------------------
 

diff --git a/docs/geos_processing_docs/generic_processing_tools.rst b/docs/geos_processing_docs/generic_processing_tools.rst
@@ -0,0 +1,4 @@
+Generic processing filters
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+In progress..
diff --git a/docs/geos_processing_docs/post_processing.rst b/docs/geos_processing_docs/post_processing.rst
@@ -0,0 +1,15 @@
+Post-processing filters
+^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+This module contains GEOS post-processing tools.
+
+Geomechanics post-processing tools
+=====================================
+
+geos.processing.post_processing.GeomechanicsCalculator module
+--------------------------------------------------------------
+
+.. automodule:: geos.processing.post_processing.GeomechanicsCalculator
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/docs/geos_processing_docs/pre_processing.rst b/docs/geos_processing_docs/pre_processing.rst
@@ -0,0 +1,4 @@
+Pre-processing filters
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+In progress..
diff --git a/docs/geos_pv_docs/processing.rst b/docs/geos_pv_docs/processing.rst
@@ -6,6 +6,7 @@ PVAttributeMapping
 
 .. automodule:: geos.pv.plugins.PVAttributeMapping
 
+
 PVCreateConstantAttributePerRegion
 -----------------------------------
 
@@ -18,6 +19,12 @@ PVFillPartialArrays
 .. automodule:: geos.pv.plugins.PVFillPartialArrays
 
 
+PVGeomechanicsCalculator plugin
+---------------------------------------
+
+.. automodule:: geos.pv.plugins.PVGeomechanicsCalculator
+
+
 PVSplitMesh
 ----------------------------------
 

diff --git a/docs/index.rst b/docs/index.rst
@@ -47,7 +47,7 @@ To do this, you can clone a copy of the geosPythonPackages repository and instal
     cd geosPythonPackages/
     python -m pip install --upgrade geos-ats
 
-    
+
 .. note::
     To upgrade an existing installation, the python executable in the above command should correspond to the version you indicated in your host config.  If you have previously built the tools, this version will be linked in the build directory: `build_dir/bin/python`.
 
@@ -87,7 +87,9 @@ Packages
     geos-mesh
 
     geos-posp
-
+
+    geos-processing
+
     geos-pv
 
     geos-timehistory

diff --git a/geos-geomechanics/src/geos/geomechanics/processing/geomechanicsCalculatorFunctions.py b/geos-geomechanics/src/geos/geomechanics/processing/geomechanicsCalculatorFunctions.py
@@ -506,8 +506,7 @@ def reservoirStressPathReal( deltaStress: npt.NDArray[ np.float64 ],
     den: npt.NDArray[ np.float64 ] = np.copy( deltaPressure )
     den[ mask ] = 1.0
     # use -1 to agree with Geos convention (i.e., compression with negative stress)
-    # take the xx, yy, and zz components only
-    rsp: npt.NDArray[ np.float64 ] = np.copy( deltaStress[ :, :3 ] )
+    rsp: npt.NDArray[ np.float64 ] = np.copy( deltaStress[ :, : ] )
     for j in range( rsp.shape[ 1 ] ):
         rsp[ :, j ] /= den
         rsp[ mask, j ] = np.nan

diff --git a/geos-geomechanics/tests/testsFunctionsGeomechanicsCalculator.py b/geos-geomechanics/tests/testsFunctionsGeomechanicsCalculator.py
@@ -181,11 +181,11 @@ def test_ReservoirStressPathReal( self: Self ) -> None:
         deltaPressure: npt.NDArray[ np.float64 ] = 0.2 * pressure
         obtained: npt.NDArray[ np.float64 ] = fcts.reservoirStressPathReal( deltaStress, deltaPressure )
         expected: npt.NDArray[ np.float64 ] = np.array( [
-            [ 8.0, 12.5, 9.0 ],
-            [ 0.32, 0.46, 0.34 ],
-            [ np.nan, np.nan, np.nan ],
-            [ 1.38, 1.81, 1.38 ],
-            [ 1.30, 1.55, 1.15 ],
+            [ 8.0, 12.5, 9.0, np.nan, 10.0, 9.5 ],
+            [ 0.32, 0.46, 0.34, np.nan, 0.39, 0.38 ],
+            [ np.nan, np.nan, np.nan, np.nan, np.nan, np.nan ],
+            [ 1.38, 1.81, 1.38, np.nan, 1.56, 1.56 ],
+            [ 1.30, 1.55, 1.15, np.nan, 1.45, 1.35 ],
         ] )
         self.assertTrue( np.array_equal( np.round( obtained, 2 ), np.round( expected, 2 ), equal_nan=True ) )
 

diff --git a/geos-posp/pyproject.toml b/geos-posp/pyproject.toml
@@ -39,6 +39,7 @@ dependencies = [
     "geos-geomechanics",
     "geos-utils",
     "geos-mesh",
+    "geos-processing",
     "vtk >= 9.3",
     "numpy >= 2.2",
     "pandas >= 2.2",
-Original file line number
+Diff line change
@@ Expand Up / @@ -27,7 +27,6 @@ geos.mesh.processing.FillPartialArrays filter @@
         :undoc-members:
         :show-inheritance:
     geos.mesh.processing.meshQualityMetricHelpers module
     -----------------------------------------------------
@@ Expand Down @@