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Releases: GMOD/hic
Releases · GMOD/hic
Release list
v2.4.0
Features
- ClearCache() credits the blocks back to a shared budget at once (465e428)
Full changelog: v2.3.0...v2.4.0
v2.3.0
Chores
- Replace the vitest inflate bench with a node script (893d643)
Features
- The block cache idles out and takes a shared budget (9f8ec92)
Full changelog: v2.2.0...v2.3.0
v2.2.0
Features
- GetTotalContacts, a library's depth from its ALL map (0e93c5d)
Full changelog: v2.1.0...v2.2.0
v2.1.0
Chores
- Prettier leaves the generated O/E oracle fixture alone (6993dc1)
Features
- GetExpectedValues, the denominator of observed/expected (60d91ab)
Full changelog: v2.0.0...v2.1.0
v2.0.0
Features
- BREAKING Drop the units parameter and chromosome-name aliasing (ca14ac8)
Other Changes
- Rewrite AI-writing tropes in README and docs (2d921ca)
- Restore claims changed by the tropes rewrite (087b1ec)
- Fold short verdict sentences into their neighbours (03b32c9)
- Fix doc errors found in the tropes audit (cf46b18)
- Restore wording the tropes rewrite changed without a trope (cfaac1c)
- Trim README and docs wordiness (30c1c4f)
- Fetch an inter-chromosomal pair's two vectors concurrently (722e2e1)
- Stop writing nvi into the caller's config, and loop the index refill (067a901)
- Drop BufferedFile's unreachable branches (7ffadf6)
- Reword two new comments flagged by the tropes scan (d1c6c00)
- Share in-flight block reads through SharedReadCache (b6fe438)
Full changelog: v1.3.2...v2.0.0
v1.3.2
Documentation
- Plainer README wording (5de84bc)
- Say which contacts a normalization leaves out (54b0347)
- Break up README walls of text (f08c26e)
Tests
- Fail when docs/api.md misses a public member or export (bb35c60)
Full changelog: v1.3.1...v1.3.2
v1.3.1
v1.3.0
Documentation
- Say what the read pattern actually is before recommending the range cache (a20f191)
- Measure the hic-straw comparison instead of asserting it (f6aeda7)
- Restore the Not DecompressionStream heading, for the external anchor (2ffcec0)
- Cut dataflow.md's overlap with optimizations.md (3045ec0)
- Cite hic-straw source lines, and drop a claim that doesn't reproduce (efa4458)
- Drop two-line subtext labels from the dataflow diagram (cdd96cc)
- Spell out ContactRecords' typed-array shape on the dataflow diagram (d5e068d)
- State dataflow.md's results positively instead of by negation (ee973ec)
- Fix agency, contrastive framing, and figures of speech in prose (465caee)
Features
- Honour an AbortSignal on every read (47fac3e)
Other Changes
- Point the dataflow SYNC note at gbz-base-js (ccefe53)
Full changelog: v1.2.1...v1.3.0
v1.2.1
Bug Fixes
- A region past the end of a chromosome no longer reads a negative length (680521a)
Tests
- Measure read depth off an in-memory fixture, not the page cache (0cb00b4)
Full changelog: v1.2.0...v1.2.1
v1.2.0
Features
- Report progress from block reads and the normalization-index walk (07226f5)
Full changelog: v1.1.0...v1.2.0