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Releases: GMOD/hic

v2.4.0

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@github-actions github-actions released this 31 Oct 00:36
d676d5e

Features

  • ClearCache() credits the blocks back to a shared budget at once (465e428)

Full changelog: v2.3.0...v2.4.0

v2.3.0

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@github-actions github-actions released this 31 Oct 00:16
26a840a

Chores

  • Replace the vitest inflate bench with a node script (893d643)

Features

  • The block cache idles out and takes a shared budget (9f8ec92)

Full changelog: v2.2.0...v2.3.0

v2.2.0

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@github-actions github-actions released this 22 Oct 19:38
78621cd

Features

  • GetTotalContacts, a library's depth from its ALL map (0e93c5d)

Full changelog: v2.1.0...v2.2.0

v2.1.0

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@github-actions github-actions released this 22 Oct 17:32
47f0977

Chores

  • Prettier leaves the generated O/E oracle fixture alone (6993dc1)

Features

  • GetExpectedValues, the denominator of observed/expected (60d91ab)

Full changelog: v2.0.0...v2.1.0

v2.0.0

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@github-actions github-actions released this 15 Oct 00:08
f620641

Features

  • BREAKING Drop the units parameter and chromosome-name aliasing (ca14ac8)

Other Changes

  • Rewrite AI-writing tropes in README and docs (2d921ca)
  • Restore claims changed by the tropes rewrite (087b1ec)
  • Fold short verdict sentences into their neighbours (03b32c9)
  • Fix doc errors found in the tropes audit (cf46b18)
  • Restore wording the tropes rewrite changed without a trope (cfaac1c)
  • Trim README and docs wordiness (30c1c4f)
  • Fetch an inter-chromosomal pair's two vectors concurrently (722e2e1)
  • Stop writing nvi into the caller's config, and loop the index refill (067a901)
  • Drop BufferedFile's unreachable branches (7ffadf6)
  • Reword two new comments flagged by the tropes scan (d1c6c00)
  • Share in-flight block reads through SharedReadCache (b6fe438)

Full changelog: v1.3.2...v2.0.0

v1.3.2

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@github-actions github-actions released this 11 Oct 16:10
382d21f

Documentation

  • Plainer README wording (5de84bc)
  • Say which contacts a normalization leaves out (54b0347)
  • Break up README walls of text (f08c26e)

Tests

  • Fail when docs/api.md misses a public member or export (bb35c60)

Full changelog: v1.3.1...v1.3.2

v1.3.1

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@github-actions github-actions released this 09 Oct 00:32
3ba3a85

Chores

  • Bump @gmod/shared-read-cache to 2.0.0 (a9aa08e)

Full changelog: v1.3.0...v1.3.1

v1.3.0

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@github-actions github-actions released this 01 Oct 14:01
2bad6c5

Documentation

  • Say what the read pattern actually is before recommending the range cache (a20f191)
  • Measure the hic-straw comparison instead of asserting it (f6aeda7)
  • Restore the Not DecompressionStream heading, for the external anchor (2ffcec0)
  • Cut dataflow.md's overlap with optimizations.md (3045ec0)
  • Cite hic-straw source lines, and drop a claim that doesn't reproduce (efa4458)
  • Drop two-line subtext labels from the dataflow diagram (cdd96cc)
  • Spell out ContactRecords' typed-array shape on the dataflow diagram (d5e068d)
  • State dataflow.md's results positively instead of by negation (ee973ec)
  • Fix agency, contrastive framing, and figures of speech in prose (465caee)

Features

  • Honour an AbortSignal on every read (47fac3e)

Other Changes

  • Point the dataflow SYNC note at gbz-base-js (ccefe53)

Full changelog: v1.2.1...v1.3.0

v1.2.1

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@github-actions github-actions released this 22 Aug 13:18
5b4b625

Bug Fixes

  • A region past the end of a chromosome no longer reads a negative length (680521a)

Tests

  • Measure read depth off an in-memory fixture, not the page cache (0cb00b4)

Full changelog: v1.2.0...v1.2.1

v1.2.0

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@github-actions github-actions released this 22 Aug 12:48
540b0d1

Features

  • Report progress from block reads and the normalization-index walk (07226f5)

Full changelog: v1.1.0...v1.2.0