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Visualizer attributes documented. #23

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Oct 22, 2024
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Visualizer attributes documented. #23

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16 changes: 14 additions & 2 deletions ovrlpy/_ovrlp.py
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Expand Up @@ -522,9 +522,21 @@ class Visualizer:
n_components_pca : float
Number of components for PCA.
umap_kwargs : dict
Keyword arguments for 2D UMAP embedding.
Keyword arguments for 2D UMAP embedding object.
cumap_kwargs : dict

Keyword arguments for 3D UMAP RGB embedding object.
genes : list
A list of genes to utilize in the model.
embedding : np.ndarray
The 2d embedding of localmax gene expression regions-of-interest.
colors : np.ndarray
The RGB embedding.
colors_min_max : list
The minimum and maximum values of the RGB embedding, necessary for normalization of the transform method.
coherence_map : np.ndarray
The coherence map of the tissue.
signal_map : np.ndarray
A pixel map of overall signal strength in the tissue, used to mask out low-signal regions that are difficult to interpret.
"""

def __init__(
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