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pyPESTO 0.2.5
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@jvanhoefer jvanhoefer released this 05 May 08:51
· 552 commits to main since this release
v0.2.5
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  • Objectives:

  • Sampling:

    • New Emcee sampler (#606)
    • Fix compatibility to new Theano version (#650)

  • Storage:

    • Improve hdf5 storage documentation (#612)
    • Hdf5 history for MultiProcessEngine (#650)
    • Minor fixes (#637, #638, #645, #649)

  • Visualization:

    • Fix bounds of parameter plots (#601)
    • Fix waterfall plots with multiple results (#611)

  • CI:

    • Move CI tests on GitHub Actions to python 3.9 (#598)
    • Add issue template (#604)
    • Update BionetGen Link (#630)
    • Introduce project.toml (#634)

  • General:

    • Introduce progress bar for optimization, profiles and ensembles (#641)
    • Extend gradient checking functionality (#644)

  • Minor fixes:

    • Fix installation of ipopt (#599)
    • Fix Zenodo link (#601)
    • Fix duplicates in documentation (#603)
    • Fix least squares optimizers (#617 #631 #632)
    • Fix trust region options (#616)
    • Fix slicing for new AMICI release (#621)
    • Refactor and document latin hypercube sampling (#647)
    • Fix missing SBML name in PEtab import (#648)
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