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IMB-Computational-Genomics-Lab

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  1. ascend ascend Public

    R package - Analysis of Single Cell Expression, Normalisation and Differential expression (ascend)

    R 22 7

  2. scIVA scIVA Public

    R package and web-tool for interactive visualisation and analysis of single cell RNA-Seq data

    R 9 6

  3. SingleCells2018Workshop SingleCells2018Workshop Public

    Materials for the Single Cells 2018 informatics workshop

    HTML 8 6

  4. hiPSC_paper_2018 hiPSC_paper_2018 Public

    R 6 3

  5. scGPS scGPS Public

    A framework for clustering (CORE) and estimation of relationship between pairs of clusters (scGPS) from single cell data

    R 4 4

  6. BGIvsIllumina_scRNASeq BGIvsIllumina_scRNASeq Public

    Code repository for the publication "Comparative performance of the BGI and Illumina sequencingtechnology for single-cell RNA-sequencing" by Senabouth et al.

    Python 4 3

Repositories

Showing 10 of 14 repositories
  • BGIvsIllumina_scRNASeq Public

    Code repository for the publication "Comparative performance of the BGI and Illumina sequencingtechnology for single-cell RNA-sequencing" by Senabouth et al.

    IMB-Computational-Genomics-Lab/BGIvsIllumina_scRNASeq’s past year of commit activity
    Python 4 GPL-3.0 3 0 0 Updated Oct 12, 2021
  • scGPS Public

    A framework for clustering (CORE) and estimation of relationship between pairs of clusters (scGPS) from single cell data

    IMB-Computational-Genomics-Lab/scGPS’s past year of commit activity
    R 4 4 2 0 Updated Dec 16, 2020
  • hiPSC_paper_2018 Public
    IMB-Computational-Genomics-Lab/hiPSC_paper_2018’s past year of commit activity
    R 6 3 2 0 Updated Apr 25, 2020
  • RetinalCellAtlas_EMBOJ_2019 Public

    Additional files to accompany adult human retina cell atlas - Lukowski & Lo et al 2019 EMBO J

    IMB-Computational-Genomics-Lab/RetinalCellAtlas_EMBOJ_2019’s past year of commit activity
    0 MIT 1 0 0 Updated Oct 3, 2019
  • ascend Public

    R package - Analysis of Single Cell Expression, Normalisation and Differential expression (ascend)

    IMB-Computational-Genomics-Lab/ascend’s past year of commit activity
    R 22 7 7 0 Updated Aug 28, 2019
  • ChromiumSingleCellPipeline Public

    Scripts to generate custom references and PBS scripts for the 10x Genomics Chromium pipeline.

    IMB-Computational-Genomics-Lab/ChromiumSingleCellPipeline’s past year of commit activity
    Python 1 0 0 0 Updated Jan 17, 2019
  • scIVA Public

    R package and web-tool for interactive visualisation and analysis of single cell RNA-Seq data

    IMB-Computational-Genomics-Lab/scIVA’s past year of commit activity
    R 9 6 0 0 Updated Nov 13, 2018
  • SingleCells2018Workshop Public

    Materials for the Single Cells 2018 informatics workshop

    IMB-Computational-Genomics-Lab/SingleCells2018Workshop’s past year of commit activity
    HTML 8 6 0 0 Updated Aug 10, 2018
  • ascend-guide Public

    Resources for getting the most out of the ascend R package

    IMB-Computational-Genomics-Lab/ascend-guide’s past year of commit activity
    0 GPL-3.0 0 0 0 Updated Mar 2, 2018
  • RetinaGanglionCells Public

    Public repository for code associated with the processing of single-cell retina ganglion cells

    IMB-Computational-Genomics-Lab/RetinaGanglionCells’s past year of commit activity
    HTML 2 0 0 0 Updated Feb 1, 2018
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