Changes for code-server 4.4.0

Dockerfile

@@ -1,16 +1,16 @@
 FROM codercom/code-server:4.4.0
 ARG PYTHON_VERSION=3.10
-ARG QUARTO_VERSION="0.9.393"
 
 USER root
 
-# Install common softwares
+# Install system libraries
 RUN apt-get -y update && \ 
     curl -s https://raw.githubusercontent.com/InseeFrLab/onyxia/main/resources/common-software-docker-images.sh | bash -s && \
     apt-get install -y --no-install-recommends cmake g++ && \
     rm -rf /var/lib/apt/lists/*
 
 # Install QUARTO
+ARG QUARTO_VERSION="0.9.508"
 RUN wget "https://github.com/quarto-dev/quarto-cli/releases/download/v${QUARTO_VERSION}/quarto-${QUARTO_VERSION}-linux-amd64.deb"
 RUN apt install "./quarto-${QUARTO_VERSION}-linux-amd64.deb"
 
@@ -30,14 +30,20 @@ RUN conda create -n basesspcloud python=$PYTHON_VERSION
 COPY environment.yml .
 RUN mamba env update -n basesspcloud -f environment.yml
 
-# Make basesspcloud env activated by default in shells
+# Use basesspcloud env by default
+RUN echo '. "/home/coder/local/bin/conda/etc/profile.d/conda.sh"' >> /home/coder/.bashrc
+RUN echo 'conda activate basesspcloud' >> /home/coder/.bashrc
 ENV PATH="/home/coder/local/bin/conda/envs/basesspcloud/bin:${PATH}"
-RUN echo "export PATH=$PATH" >> /home/coder/.bashrc  # Temporary fix while PATH gets overwritten by code-server
+RUN echo "export PATH=$PATH" >> /home/coder/.bashrc
+
+# Switch back to non-root user
+USER coder
 
 # Additional VSCode settings
-# Put in remote settings because : https://github.com/coder/code-server/issues/4609
+RUN mkdir -p /home/coder/.local/share/code-server/User/
+COPY --chown=coder:coder settings/User.json /home/coder/.local/share/code-server/User/settings.json
 RUN mkdir -p /home/coder/.local/share/code-server/Machine/
-COPY settings.json /home/coder/.local/share/code-server/Machine/settings.json
+COPY --chown=coder:coder settings/Machine.json /home/coder/.local/share/code-server/Machine/settings.json
 
 # INSTALL VSTUDIO EXTENSIONS
 RUN code-server --install-extension ms-python.python

settings/Machine.json

@@ -0,0 +1,3 @@
+{
+    "python.defaultInterpreterPath": "/home/coder/local/bin/conda/envs/basesspcloud/bin/python"
+}

settings/User.json

@@ -0,0 +1,8 @@
+{
+    "workbench.colorTheme": "Default Dark+", 
+    "security.workspace.trust.enabled": false,
+    "security.workspace.trust.startupPrompt": "never",
+    "terminal.integrated.inheritEnv": false,
+    "python.linting.flake8Enabled": true,
+    "python.testing.pytestEnabled": true
+}