test errors

[gdkrmr]

Test errors on the cluster:

Pkg.test("CABLAB")

INFO: Testing CABLAB
WARNING: could not import Base.lastidx into LegacyStrings

WARNING: deprecated syntax "call(::Type{T}, ...)".
Use "(::Type{T})(...)" instead.

WARNING: deprecated syntax "call(::Core.kwftype(Type{T}), ...)".
Use "(::Core.kwftype(Type{T}))(...)" instead.
WARNING: Method definition (::Type{Vega.VegaScene})(Any, Any, Any, Any, Any, Any, Any) in module Vega overwritten.
WARNING: `@osx_only` is deprecated, use `@static if is_apple()` instead
 in depwarn(::String, ::Symbol) at ./deprecated.jl:64
 in @osx_only(::Any) at ./deprecated.jl:496
 in include_from_node1(::String) at ./loading.jl:488 (repeats 2 times)
 in macro expansion; at ./none:2 [inlined]
 in anonymous at ./<missing>:?
 in eval(::Module, ::Any) at ./boot.jl:234
 in process_options(::Base.JLOptions) at ./client.jl:239
 in _start() at ./client.jl:318
while loading /Net/Groups/BGI/people/gkraemer/.julia/v0.5/Vega/src/render.jl, in expression starting on line 2
WARNING: Base.writemime is deprecated.
  likely near /Net/Groups/BGI/people/gkraemer/.julia/v0.5/Vega/src/render.jl:13
WARNING: Base.writemime is deprecated.
  likely near /Net/Groups/BGI/people/gkraemer/.julia/v0.5/Vega/src/render.jl:13
WARNING: Base.writemime is deprecated.
  likely near /Net/Groups/BGI/people/gkraemer/.julia/v0.5/Vega/src/render.jl:39
WARNING: Method definition show(IO, Base.Multimedia.MIME{:text/html}, Vega.VegaVisualization) in module Vega at /Net/Groups/BGI/people/gkraemer/.julia/v0.5/Vega/src/render.jl:14 overwritten at /Net/Groups/BGI/people/gkraemer/.julia/v0.5/Vega/src/render.jl:40.
WARNING: Base.writemime is deprecated.
  likely near /Net/Groups/BGI/people/gkraemer/.julia/v0.5/Vega/src/render.jl:39
WARNING: symbol is deprecated, use Symbol instead.
 in depwarn(::String, ::Symbol) at ./deprecated.jl:64
 in symbol(::String, ::Vararg{String,N}) at ./deprecated.jl:30
 in macro expansion; at /Net/Groups/BGI/people/gkraemer/.julia/v0.5/Vega/src/intermediates/xlab_ylab.jl:5 [inlined]
 in anonymous at ./<missing>:?
 in include_from_node1(::String) at ./loading.jl:488 (repeats 2 times)
 in macro expansion; at ./none:2 [inlined]
 in anonymous at ./<missing>:?
 in eval(::Module, ::Any) at ./boot.jl:234
 in process_options(::Base.JLOptions) at ./client.jl:239
 in _start() at ./client.jl:318
while loading /Net/Groups/BGI/people/gkraemer/.julia/v0.5/Vega/src/intermediates/xlab_ylab.jl, in expression starting on line 3
WARNING: symbol is deprecated, use Symbol instead.
 in depwarn(::String, ::Symbol) at ./deprecated.jl:64
 in symbol(::String, ::Vararg{String,N}) at ./deprecated.jl:30
 in macro expansion; at /Net/Groups/BGI/people/gkraemer/.julia/v0.5/Vega/src/intermediates/xlim_ylim.jl:5 [inlined]
 in anonymous at ./<missing>:?
 in include_from_node1(::String) at ./loading.jl:488 (repeats 2 times)
 in macro expansion; at ./none:2 [inlined]
 in anonymous at ./<missing>:?
 in eval(::Module, ::Any) at ./boot.jl:234
 in process_options(::Base.JLOptions) at ./client.jl:239
 in _start() at ./client.jl:318
while loading /Net/Groups/BGI/people/gkraemer/.julia/v0.5/Vega/src/intermediates/xlim_ylim.jl, in expression starting on line 3
WARNING: Method definition show(IO, Base.Multimedia.MIME{:text/html}, Vega.VegaVisualization) in module Vega at /Net/Groups/BGI/people/gkraemer/.julia/v0.5/Vega/src/render.jl:40 overwritten in module CABLAB at /Net/Groups/BGI/people/gkraemer/.julia/v0.5/CABLAB/src/CABLAB.jl:35.
WARNING: Method definition show(IO, Base.Multimedia.MIME{:text/html}, Vega.VegaVisualization) in module Vega at /Net/Groups/BGI/people/gkraemer/.julia/v0.5/Vega/src/render.jl:40 overwritten in module CABLAB at /Net/Groups/BGI/people/gkraemer/.julia/v0.5/CABLAB/src/CABLAB.jl:35.
ERROR: LoadError: LoadError: KeyError: key "air_temperature_2m" not found
 in getindex at ./dict.jl:688 [inlined]
 in #open#35(::UInt16, ::Bool, ::Function, ::String, ::String) at /Net/Groups/BGI/people/gkraemer/.julia/v0.5/NetCDF/src/NetCDF.jl:513
 in getvartype(::CABLAB.CubeAPI.RemoteCube, ::String) at /Net/Groups/BGI/people/gkraemer/.julia/v0.5/CABLAB/src/CubeAPI/CubeAPI.jl:438
 in getCubeData(::CABLAB.CubeAPI.RemoteCube, ::String, ::Tuple{DateTime,DateTime}, ::Tuple{Int64,Int64}, ::Tuple{Int64,Int64}) at /Net/Groups/BGI/people/gkraemer/.julia/v0.5/CABLAB/src/CubeAPI/CubeAPI.jl:453
 in #getCubeData#6(::String, ::Tuple{DateTime,DateTime}, ::Tuple{Int64,Int64}, ::Tuple{Int64,Int64}, ::Function, ::CABLAB.CubeAPI.RemoteCube) at /Net/Groups/BGI/people/gkraemer/.julia/v0.5/CABLAB/src/CubeAPI/CubeAPI.jl:324
 in (::CABLAB.CubeAPI.#kw##getCubeData)(::Array{Any,1}, ::CABLAB.CubeAPI.#getCubeData, ::CABLAB.CubeAPI.RemoteCube) at ./<missing>:0
 in include_from_node1(::String) at ./loading.jl:488 (repeats 2 times)
 in process_options(::Base.JLOptions) at ./client.jl:262
 in _start() at ./client.jl:318
while loading /Net/Groups/BGI/people/gkraemer/.julia/v0.5/CABLAB/test/access.jl, in expression starting on line 6
while loading /Net/Groups/BGI/people/gkraemer/.julia/v0.5/CABLAB/test/runtests.jl, in expression starting on line 4
===[ ERROR: CABLAB ]===

failed process: Process(`/Net/Groups/BGI/people/gkraemer/progs/julia_0.5/usr/bin/julia -Cnative -J/Net/Groups/BGI/people/gkraemer/progs/julia_0.5/usr/lib/julia/sys.so --compile=yes --depwarn=yes --check-bounds=yes --code-coverage=none --color=no --compilecache=yes /Net/Groups/BGI/people/gkraemer/.julia/v0.5/CABLAB/test/runtests.jl`, ProcessExited(1)) [1]

=======================
ERROR: CABLAB had test errors
 in #test#61(::Bool, ::Function, ::Array{AbstractString,1}) at ./pkg/entry.jl:740
 in (::Base.Pkg.Entry.#kw##test)(::Array{Any,1}, ::Base.Pkg.Entry.#test, ::Array{AbstractString,1}) at ./<missing>:0
 in (::Base.Pkg.Dir.##2#3{Array{Any,1},Base.Pkg.Entry.#test,Tuple{Array{AbstractString,1}}})() at ./pkg/dir.jl:31
 in cd(::Base.Pkg.Dir.##2#3{Array{Any,1},Base.Pkg.Entry.#test,Tuple{Array{AbstractString,1}}}, ::String) at ./file.jl:59
 in #cd#1(::Array{Any,1}, ::Function, ::Function, ::Array{AbstractString,1}, ::Vararg{Array{AbstractString,1},N}) at ./pkg/dir.jl:31
 in (::Base.Pkg.Dir.#kw##cd)(::Array{Any,1}, ::Base.Pkg.Dir.#cd, ::Function, ::Array{AbstractString,1}, ::Vararg{Array{AbstractString,1},N}) at ./<missing>:0
 in #test#3(::Bool, ::Function, ::String, ::Vararg{String,N}) at ./pkg/pkg.jl:258
 in test(::String, ::Vararg{String,N}) at ./pkg/pkg.jl:258

[meggart]

The NetCDF library you link to (the system libnetcdf) might not include THREDDS support. Can you try the following:

using Conda
Conda.add("libnetcdf")
Pkg.build("NetCDF")

and make sure that the Conda NetCDF version is used by inspecting .julia/v0.5/NetCDF/deps/build.jl?

[gdkrmr]

fixed, thanks!

[meggart]

I leave the issue open, we might want to check when installing CABLAB, that THREDDS support is built in.

[meggart]

A better error message is thrown now when trying to open a remote Cube without DAP support.