v1.4.0

NetworkDynamics v1.4.0

Diff since v1.3.0

Merged pull requests:

• WIP: end-to-end GPU solving (#392) (@hexaeder)
• use ParallelTestRunner (#398) (@hexaeder)
• warn on comp allocs (#400) (@hexaeder)
• CI: precompile for x86-64-v3 only (#401) (@hexaeder)
• skip quasi newton solvers in reinit (#402) (@hexaeder)
• Parallel edges (#403) (@hexaeder)
• allow dupllicated (but different) optional formula (#404) (@hexaeder)
• allow Construction of Networks without Edges (#405) (@henrik-wolf)
• improve handling of algebraic cycles in simplifcation (#406) (@hexaeder)
• add allocation checks on components and NW (#407) (@hexaeder)
• dependency aware observable expansion (#408) (@hexaeder)
• improve type stability and reduce type size (#409) (@hexaeder)
• allow affects to read observed (#410) (@hexaeder)
• parameter timeseries (#411) (@hexaeder)
• Fix type conversion in create_parameter_timeseries_collection (#412) (@hexaeder)
• add logo based on 3-population dynamics (#413) (@hexaeder)
• Better breaking of ff in components (#414) (@hexaeder)
• small performance improvements (#415) (@hexaeder)
• Iterative Callbacks (#416) (@hexaeder)
• fix ff injector vertex WITH f function (#417) (@hexaeder)
• fix handling of loop in init formulas (#418) (@hexaeder)
• preset time callback batching (#419) (@hexaeder)
• only use norton form when it does not require additional div by state (#421) (@hexaeder)
• cleanup and readme update (#422) (@hexaeder)
• Bump actions/checkout from 4 to 7 (#423) (@dependabot[bot])
• Bump peter-evans/create-or-update-comment from 3 to 5 (#424) (@dependabot[bot])
• Bump actions/upload-artifact from 4 to 7 (#425) (@dependabot[bot])
• Bump julia-actions/setup-julia from 2 to 3 (#426) (@dependabot[bot])
• Bump codecov/codecov-action from 4 to 7 (#427) (@dependabot[bot])
• CompatHelper: bump compat for DocStringExtensions to 0.10, (keep existing compat) (#428) (@github-actions[bot])
• default to alias_p=false (#431) (@hexaeder)
• Better codegen for f/g/obsf functions (#432) (@hexaeder)
• improve caching (#433) (@hexaeder)
• fix sparsity detection on RGF after expr sinking (#434) (@hexaeder)
• various TTFX improvements (#435) (@hexaeder)
• despecialize mass matrix and graph type (#436) (@hexaeder)
• register global context for cache key (#437) (@hexaeder)
• better docs on caching (#438) (@hexaeder)
• Fix external inputs referencing component outputs (#439) (@hexaeder)
• no more NWState(thing) / NWParameter(thing) (#440) (@hexaeder)
• increase caching performance (#441) (@hexaeder)
• error on mtkcompile=true without (full) MTK loaded (#442) (@hexaeder)
• enable Enzyme reverse diff through MTK edges (#443) (@hexaeder)
• small fixes across documentation (#444) (@hexaeder)

Closed issues:

• Unexpected memory allocations with array-based definitions in MTK 11 (#399)