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  • Fix links to point to wiki pages instead of files

    @songif-ofo songif-ofo committed Jun 15, 2026
    b8a114c
  • Fix wikilinks in 02-Input-Data.md

    @songif-ofo songif-ofo committed Jun 15, 2026
    eed5969
  • Update wiki for KEGG and Reactome pathway support - Home.md: expanded title, quick start sections, data source comparison table - 01-Worked-Example.md: added KEGG and Reactome worked examples - 02-Input-Data.md: documented KEGGREST and reactome.db data sources - 03-Pathway-Genes.md: added get_pathway_genes_kegg() and get_pathway_genes_reactome() docs - 04-DSGE-Analysis.md: updated gene_id_col and source parameter docs Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

    @songif-ofo songif-ofo committed Jun 15, 2026
    a89ddcb
  • remove rank-based z-score

    @songif-ofo songif-ofo committed Jun 13, 2026
    9735f4f
  • add numeric prefixes for Pages ordering

    @songif-ofo songif-ofo committed Jun 12, 2026
    89767fa
  • remove letter prefixes, use plain filenames

    @songif-ofo songif-ofo committed Jun 12, 2026
    fb2318d
  • remove sidebar reference from Home

    @songif-ofo songif-ofo committed Jun 12, 2026
    3b0654f
  • add letter prefixes for Pages ordering, remove sidebar

    @songif-ofo songif-ofo committed Jun 12, 2026
    4210d2c
  • remove numeric prefixes, use original filenames

    @songif-ofo songif-ofo committed Jun 12, 2026
    7c1b670
  • fix Worked Example title and description

    @songif-ofo songif-ofo committed Jun 12, 2026
    3b59699
  • renumber pages 01-07 (Home.md is default)

    @songif-ofo songif-ofo committed Jun 12, 2026
    d221ab5
  • keep Home.md as default home page, prefix other files

    @songif-ofo songif-ofo committed Jun 12, 2026
    440b301
  • add numeric prefixes for Pages ordering

    @songif-ofo songif-ofo committed Jun 12, 2026
    cde3713
  • use FLT3 example data in Input-Data

    @songif-ofo songif-ofo committed Jun 12, 2026
    9c1bf56
  • update Input Data Sources table to match old README

    @songif-ofo songif-ofo committed Jun 12, 2026
    2798125
  • remove BY mention from Home

    @songif-ofo songif-ofo committed Jun 12, 2026
    abee5cb
  • fix: move OrgDb to section 2

    @songif-ofo songif-ofo committed Jun 12, 2026
    9d7fe9a
  • reorder: GAF(2) -> OBO(3) -> OrgDb(4)

    @songif-ofo songif-ofo committed Jun 12, 2026
    ee78545
  • add get_pathway_genes_db to Input-Data page

    @songif-ofo songif-ofo committed Jun 12, 2026
    9b6b162
  • initialize wiki: reorganize README into structured pages

    @songif-ofo songif-ofo committed Jun 12, 2026
    afb02b3
  • Initial Home page

    @LiHuiJ LiHuiJ committed Jun 12, 2026
    31f36b5