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Experimental evidence at protein level: Swiss-Prot protein existence level 1. Transfers the 4'-phosphopantetheine moiety from coenzyme A to the 'Ser-36' of acyl-carrier-protein. From Escherichia coli (strain K12).","bla","\u03b2-lactamase; bla; confers resistance to ampicillin, carbenicillin, and related antibiotics","Accession: RF00106 - RNAI","FATB_ARATH - Also known as FATB1. Experimental evidence at protein level: Swiss-Prot protein existence level 1. Plays an essential role in chain termination during de novo fatty acid synthesis. Possesses high thioesterase activity for palmitoyl-ACP versus other acyl-ACPs. Substrate preference is 16:0 &gt; 18:1 &gt; 18:0 &gt; 16:1. Plays an essential role in the supply of saturated fatty acids necessary for plant growth and seed development. Contributes to 16:0 production particularly in flowers. May be involved in the synthesis of long chain fatty acid. From Arabidopsis thaliana (Mouse-ear cress).","FATA1_ARATH - Also known as FATA1. Experimental evidence at protein level: Swiss-Prot protein existence level 1. Plays an essential role in chain termination during de novo fatty acid synthesis. Possesses high thioesterase activity for oleoyl- ACP versus other acyl-ACPs. Substrate preference is 18:1 &gt; 18:0 &gt; 16:1. From Arabidopsis thaliana (Mouse-ear cress).","CRP_ECOLI - Also known as cap, csm. Experimental evidence at protein level: Swiss-Prot protein existence level 1. A global transcription regulator. Complexes with cyclic AMP (cAMP) which allosterically activates DNA binding (to consensus sequence 5'-AAATGTGATCTAGATCACATTT-3') to directly regulate the transcription of about 300 genes in about 200 operons and indirectly regulate the expression of about half the genome. There are 3 classes of CRP promoters; class I promoters have a single CRP-binding site upstream of the RNA polymerase (RNAP)-binding site, whereas in class II promoters the single CRP- and RNAP-binding site overlap, CRP making multiple contacts with RNAP. Class III promoters require multiple activator molecules, including at least one CRP dimer. It can act as an activator, repressor, coactivator or corepressor. Induces a severe bend in DNA (about 87 degrees), bringing upstream promoter elements into contact with RNAP. Acts as a negative regulator of its own synthesis as well as for adenylate cyclase (cyaA), which generates cAMP. High levels of active CRP are detrimental to growth (PubMed:16260780). Plays a major role in carbon catabolite repression (CCR). CCR involves cAMP, adenylate cyclase (cyaA), CRP and the EIIA-Glc component of the PTS (crr). 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4224","AmpR_promoter_(5)","AmpR_(2)","1","Q9SJE2","Q42561","P0ACJ8","Q06891"],"sstart":{"__ndarray__":"QwUBAMAAjQABAAEAAQABADIAJwAPAJgA","dtype":"int16","order":"little","shape":[12]},"text_align":["left","left","left","left","left","left","left","left","left","left","left","left"],"theta":{"__ndarray__":"kshDP9MEAUBjiu+u1WMFQEFJQsZzXwNAlorv5zU5DsBXwmLNcVUKQEzvY2HJLAhAfvF+61heB0BMfMNzu3QFQFAtCpBLcQ1ANoWfj+ZKEEBawDjhxloIQO6za9MGJANA","dtype":"float64","order":"little","shape":[12]},"wend":{"__ndarray__":"+Fl2UR1U/1KERx1LBk4CUKJCVjx6StlU","dtype":"int16","order":"little","shape":[12]},"wiggle":{"__ndarray__":"ygBYABwAFQA4AA0AgQAPAKMAkQAsAA0A","dtype":"int16","order":"little","shape":[12]},"wstart":{"__ndarray__":"SlbaT5ZTnVJ7RtxKrEu4T6g/rTmtSZpU","dtype":"int16","order":"little","shape":[12]},"x":[[-0.08043880679828817,-0.08650304262080992,-0.092467366812367,-0.09832489053599486,-0.1040688483100304,-0.10969260582229212,-0.11518966759275773,-0.12055368447589042,-0.1257784609939464,-0.12406872071146671,-0.10407050325895056,-0.09974746482015297,-0.09530921734832236,-0.09076088705093205,-0.08610772728190332,-0.08135511247394497,-0.07650853193104476,-0.07157358348828434,-0.06655596704629935],[-0.17961561975823653,-0.17713161343268,-0.17449113174503733,-0.17169650725650498,-0.1513597511674423,-0.14206360752695588,-0.14437591103777198,-0.14656067507374027,-0.14861596964767793],[-0.14705404466987107,-0.14915162497422665,-0.14000671389365169,-0.1234097201563398,-0.12167415878776132],[-0.15633472561350617,-0.1584421378734825,-0.16049941654921987,-0.1327990096320956,-0.1310967942811048,-0.1293530978426472],[-0.1940262777721601,-0.19478412329463154,-0.1954312330610453,-0.17944431802357344,-0.16170198471548414,-0.16116655886814688,-0.16053950901960454],[-0.19558979866708087,-0.17816433230109555,-0.16183318366870142],[-0.19499096368508792,-0.19402627777216014,-0.1928747271903019,-0.19153742098577597,-0.19001564710413302,-0.18831087114980477,-0.16844989805765498,-0.15581051775339172,-0.15722106841611003,-0.15848020112021055,-0.15958670320821933,-0.16053950901960456,-0.16133770091710317],[-0.21160048106881643,-0.1988701805800738,-0.18112857782298944],[-0.1578047346191634,-0.16176124049344281,-0.1655269373751137,-0.1690973833544438,-0.17246836683415306,-0.17563591149729496,-0.1785962809976077,-0.16801380469059207,-0.14777255737365505,-0.14532311458913236,-0.14270225276125353,-0.1399130633846413,-0.13695883650834278,-0.13384305685498057,-0.1305693997102722],[-0.10251125725885701,-0.10761953636085922,-0.11262668058872614,-0.11752798450589504,-0.12231884213865955,-0.1269947513046086,-0.13155131784352792,-0.1281832183382787,-0.10884702948474644,-0.10507687544492994,-0.10120797598274875,-0.09724396687543597,-0.09318857327899674,-0.08904560622751294,-0.08481895905174462],[-0.1958173069546588,-0.19629036220650548,-0.17988690563829415,-0.16241283776477353,-0.16202142656654506],[-0.1442767154557642,-0.1290094620725547,-0.11937616558015006]],"y":[[0.1798293590069977,0.17699215693736925,0.1739505276645839,0.1707079842921374,0.1672682719807432,0.163635363622645,0.15981345525289786,0.15580696120291757,0.1516205090018969,0.13041070715635303,0.12545250237212788,0.12891641967551046,0.13223143759503728,0.1353937272613763,0.13839963620741694,0.1412456925868954,0.1439286091844019,0.14644528721213798,0.1487928198890387],[0.08091495003313412,0.08621711850169679,0.09144312408451509,0.09658835020807083,0.09741778957936761,0.07991827961378448,0.07566106205977643,0.0713370066790689,0.0669499332761465],[0.1310881685974427,0.128696514201231,0.11312877646603077,0.10648493307005405,0.10846381462631045],[0.11986848446255478,0.11706873598907765,0.1142319451263963,0.09451678708427712,0.09686397952395763,0.09918052267713923],[-0.03409990518873281,-0.029464305733239018,-0.024811955671397636,-0.014132824525006846,-0.020529689210344235,-0.02437909560669015,-0.028214642364281457],[0.023529357351418884,0.025641191386220823,0.0194684530369608],[0.028062859461586126,0.034099905188732765,0.04010410965557795,0.04606969027590296,0.051990901661709915,0.05786204115654438,0.06343998616303159,0.04787569902800371,0.043017852643952866,0.038118576218132895,0.03318258819217871,0.02821464236428142,0.02321952331085552],[0.10473035095637484,0.09195358218171186,0.0896484706831146],[-0.11792652683673603,-0.11243798768220001,-0.10681681985162816,-0.10106965391590236,-0.09520326906971217,-0.08922458513500849,-0.08314065439857667,-0.06458607770558283,-0.0687915059236954,-0.0738254181573928,-0.07877224801199534,-0.08362616034666032,-0.08838142962342836,-0.09303244666090658,-0.09757372525070036],[-0.16822735251797918,-0.16500616774373528,-0.16162991932054244,-0.1581017800594987,-0.1544250655102911,-0.15060323084542582,-0.14663986761324865,-0.12636875617193188,-0.12133146406578439,-0.12461079506499698,-0.12777302374709362,-0.1308151784248644,-0.13373440024999195,-0.13652794589963882,-0.13919319015447004],[0.021554171221017514,0.016706097833991428,0.006379747634464555,0.01382281191340407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of replication"},"renderers":[{"id":"1050"}]},"id":"1067","type":"LegendItem"},{"attributes":{},"id":"1159","type":"Selection"},{"attributes":{"axis":{"id":"1018"},"coordinates":null,"dimension":1,"grid_line_color":"#EFEFEF","group":null,"ticker":null},"id":"1021","type":"Grid"},{"attributes":{"data":{"Description":["yeast 2\u03bc plasmid origin of replication","S. cerevisiae TDH3; promoter for glyceraldehyde-3-phosphate dehydrogenase","high-copy-number ColE1/pMB1/pBR322/pUC origin of replication ","S. cerevisiae TEF1; promoter for EF-1\u03b1","FABF_ECOLI - Also known as fabJ From Escherichia coli (strain K12).","FABB_ECOLI - Also known as fabC. Experimental evidence at protein level: Swiss-Prot protein existence level 1. Involved in the type II fatty acid elongation cycle. Catalyzes the elongation of a wide range of acyl-ACP by the addition of two carbons from malonyl-ACP to an acyl acceptor (PubMed:9013860, PubMed:8910376, PubMed:19679654, PubMed:22017312). Can also use unsaturated fatty acids (PubMed:3076377, PubMed:8910376, PubMed:19679654). Catalyzes a key reaction in unsaturated fatty acid (UFA) synthesis, the elongation of the cis-3-decenoyl-ACP produced by FabA (PubMed:19679654). Can use acyl chains from C-6 to C-14 (PubMed:9013860, PubMed:8910376, PubMed:19679654, PubMed:22017312). Has an absolute requirement for an ACP substrate as the acyl donor, and no activity is detected when both substrates are based on CoA (PubMed:22017312). From Escherichia coli (strain K12).","FABH_ECOLI - Experimental evidence at protein level: Swiss-Prot protein existence level 1. Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Has some substrate specificity for acetyl-CoA. Its substrate specificity determines the biosynthesis of straight-chain of fatty acids instead of branched-chain (PubMed:7592873, PubMed:8631920, PubMed:8910376, PubMed:10629181). Can also use propionyl-CoA, with lower efficiency (PubMed:8631920, PubMed:10629181). From Escherichia coli (strain K12).","acyl carrier protein (ACP) from E. coli; acpP","FABD_ECOLI - Also known as tfpA. Experimental evidence at protein level: Swiss-Prot protein existence level 1. From Escherichia coli (strain K12).","Rop protein, which maintains plasmids at low copy number; rop","FABG_ECOLI - Experimental evidence at protein level: Swiss-Prot protein existence level 1. Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. From Escherichia coli (strain K12).","basis of mobility region from pBR322","FABA_ECOLI - Experimental evidence at protein level: Swiss-Prot protein existence level 1. Necessary for the introduction of cis unsaturation into fatty acids (PubMed:8910376). Catalyzes the dehydration of (3R)-3- hydroxydecanoyl-ACP to E-(2)-decenoyl-ACP and then its isomerization to Z-(3)-decenoyl-ACP (PubMed:8910376). Can catalyze the dehydratase reaction for beta-hydroxyacyl-ACPs with saturated chain lengths up to 16:0, being most active on intermediate chain length (PubMed:8910376, PubMed:7592873, PubMed:10629181). Is inactive in the dehydration of long chain unsaturated beta-hydroxyacyl-ACP (PubMed:8910376). From Escherichia coli (strain K12).","FABZ_ECOLI - Also known as sefA, yaeA. Experimental evidence at protein level: Swiss-Prot protein existence level 1. Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs. From Escherichia coli (strain K12).","3-isopropylmalate dehydrogenase, required for leucine biosynthesis; S. cerevisiae LEU2; yeast auxotrophic marker","ACPS_ECOLI - Also known as dpj. Experimental evidence at protein level: Swiss-Prot protein existence level 1. Transfers the 4'-phosphopantetheine moiety from coenzyme A to the 'Ser-36' of acyl-carrier-protein. From Escherichia coli (strain K12).","bla","\u03b2-lactamase; bla; confers resistance to ampicillin, carbenicillin, and related antibiotics","Experimental evidence at protein level: Swiss-Prot protein existence level 1. From Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast).","S. cerevisiae LEU2","Accession: RF00106 - RNAI","FATB_ARATH - Also known as FATB1. Experimental evidence at protein level: Swiss-Prot protein existence level 1. Plays an essential role in chain termination during de novo fatty acid synthesis. Possesses high thioesterase activity for palmitoyl-ACP versus other acyl-ACPs. Substrate preference is 16:0 &gt; 18:1 &gt; 18:0 &gt; 16:1. Plays an essential role in the supply of saturated fatty acids necessary for plant growth and seed development. Contributes to 16:0 production particularly in flowers. May be involved in the synthesis of long chain fatty acid. From Arabidopsis thaliana (Mouse-ear cress).","FATA1_ARATH - Also known as FATA1. Experimental evidence at protein level: Swiss-Prot protein existence level 1. Plays an essential role in chain termination during de novo fatty acid synthesis. Possesses high thioesterase activity for oleoyl- ACP versus other acyl-ACPs. Substrate preference is 18:1 &gt; 18:0 &gt; 16:1. From Arabidopsis thaliana (Mouse-ear cress).","FABI_ARATH - Also known as ENR-A, ENR1. Experimental evidence at protein level: Swiss-Prot protein existence level 1. Catalyzes the NAD-dependent reduction of a carbon-carbon double bond in an enoyl moiety that is covalently linked to an acyl carrier protein (ACP). Catalyzes the last reduction step in the de novo synthesis cycle of fatty acids. Involved in the elongation cycle of fatty acids which are used in lipid metabolism. Required for normal plant growth. From Arabidopsis thaliana (Mouse-ear cress).","CRP_ECOLI - Also known as cap, csm. Experimental evidence at protein level: Swiss-Prot protein existence level 1. A global transcription regulator. Complexes with cyclic AMP (cAMP) which allosterically activates DNA binding (to consensus sequence 5'-AAATGTGATCTAGATCACATTT-3') to directly regulate the transcription of about 300 genes in about 200 operons and indirectly regulate the expression of about half the genome. There are 3 classes of CRP promoters; class I promoters have a single CRP-binding site upstream of the RNA polymerase (RNAP)-binding site, whereas in class II promoters the single CRP- and RNAP-binding site overlap, CRP making multiple contacts with RNAP. Class III promoters require multiple activator molecules, including at least one CRP dimer. It can act as an activator, repressor, coactivator or corepressor. Induces a severe bend in DNA (about 87 degrees), bringing upstream promoter elements into contact with RNAP. Acts as a negative regulator of its own synthesis as well as for adenylate cyclase (cyaA), which generates cAMP. High levels of active CRP are detrimental to growth (PubMed:16260780). Plays a major role in carbon catabolite repression (CCR). CCR involves cAMP, adenylate cyclase (cyaA), CRP and the EIIA-Glc component of the PTS (crr). In the presence of glucose EIIA-Glc is dephosphorylated, and does not activate adenylate cyclase, leading to reduced cAMP and thus decreased CRP activity. Also plays a role in many other processes (see PubMed:22573269). From Escherichia coli (strain K12).","site-specific recombinase FLP is a site-specific recombinase from Saccharomyces cerevisiae. Recombination occurs at FRT sequences.","FRT site with a mutation in the core sequence (Azam et al., 1997) FLP recombinase from the Saccharomyces cerevisiae 2\u03bc plasmid","RAF_YEAST - Experimental evidence at transcript level: Swiss-Prot protein existence level 2. Antagonizes transcriptional repression of recombinase FLP by REP1-REP2. May play a role in plasmid partitioning. From Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)."],"Feature":["2\u03bc ori","GAP promoter","ori","TEF1 promoter","fabF","fabB","fabH","ACP","fabD","rop","fabG","bom","fabA","fabZ","LEU2","acpS","AmpR promoter","AmpR","YHX3_YEAST","LEU2 promoter","RNAI","FATB","FATA","MOD1","crp","FLP","FRT 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