restructure package layout

[enryH]

No description provided.

[enryH]

To use the config file directly provided with the repo it is still necessary to got into the docs folder, so from root the following code does not work: vuegen -c docs/example_data/MicW2Graph/report_config_micw2graph.yaml --report_type streamlit

[sayalaruano]

I fixed the component paths of ´report_config_micw2graph.yaml´ by appending "docs/" and vuegen is running locally from the root. But, now the tests are not passing bc of this change.

[enryH]

I fixed the component paths of ´report_config_micw2graph.yaml´ by appending "docs/" and vuegen is running locally from the root. But, now the tests are not passing bc of this change.

The workflow for tests I would not touch. It's later also Sphinx specific issues (the results need to be in the docs folder). I will revert you changes, also in the light of the changes in #44

[enryH]

So the issue is with the example notebook. If I run vuegen_demo.ipynb through sphinx the working directory will be docs. Therefore I checked that execution for that notebooked worked as expected.

RuntimeError: An error occurred while reading the network file: The file at docs/example_data/MicW2Graph/2_Microbial_Association_Networks/1_Network_visualization1/1_man_example.graphml was not found or cannot be accessed.

What we could do is change the directory execution of the workflow - if you agree!