Add basic example directory and notebook

docs/example_data/Basic_example_vuegen_demo_notebook/1_Plots/1_Interactive/1_top_species_plot_by_biome_plotly.json

@@ -0,0 +1 @@
+{"data":[{"alignmentgroup":"True","hovertemplate":"Species=Methanothermobacter thermautotrophicus\u003cbr\u003eBiome=%{x}\u003cbr\u003eRelative Abundance=%{y}\u003cextra\u003e\u003c\u002fextra\u003e","legendgroup":"Methanothermobacter thermautotrophicus","marker":{"color":"#2E91E5","opacity":0.8,"pattern":{"shape":""}},"name":"Methanothermobacter thermautotrophicus","offsetgroup":"Methanothermobacter thermautotrophicus","orientation":"v","showlegend":true,"textposition":"auto","x":["Wastewater"],"xaxis":"x","y":[23.007802763707645],"yaxis":"y","type":"bar"},{"alignmentgroup":"True","hovertemplate":"Species=Methanohalobium evestigatum\u003cbr\u003eBiome=%{x}\u003cbr\u003eRelative Abundance=%{y}\u003cextra\u003e\u003c\u002fextra\u003e","legendgroup":"Methanohalobium evestigatum","marker":{"color":"#E15F99","opacity":0.8,"pattern":{"shape":""}},"name":"Methanohalobium evestigatum","offsetgroup":"Methanohalobium evestigatum","orientation":"v","showlegend":true,"textposition":"auto","x":["Wastewater"],"xaxis":"x","y":[13.17851726366751],"yaxis":"y","type":"bar"},{"alignmentgroup":"True","hovertemplate":"Species=Methanobacterium bryantii\u003cbr\u003eBiome=%{x}\u003cbr\u003eRelative Abundance=%{y}\u003cextra\u003e\u003c\u002fextra\u003e","legendgroup":"Methanobacterium bryantii","marker":{"color":"#1CA71C","opacity":0.8,"pattern":{"shape":""}},"name":"Methanobacterium bryantii","offsetgroup":"Methanobacterium bryantii","orientation":"v","showlegend":true,"textposition":"auto","x":["Wastewater"],"xaxis":"x","y":[10.587594154897745],"yaxis":"y","type":"bar"},{"alignmentgroup":"True","hovertemplate":"Species=Akkermansia muciniphila\u003cbr\u003eBiome=%{x}\u003cbr\u003eRelative Abundance=%{y}\u003cextra\u003e\u003c\u002fextra\u003e","legendgroup":"Akkermansia muciniphila","marker":{"color":"#FB0D0D","opacity":0.8,"pattern":{"shape":""}},"name":"Akkermansia muciniphila","offsetgroup":"Akkermansia muciniphila","orientation":"v","showlegend":true,"textposition":"auto","x":["Wastewater"],"xaxis":"x","y":[3.710854163938305],"yaxis":"y","type":"bar"},{"alignmentgroup":"True","hovertemplate":"Species=Lacticigenium naphtae\u003cbr\u003eBiome=%{x}\u003cbr\u003eRelative Abundance=%{y}\u003cextra\u003e\u003c\u002fextra\u003e","legendgroup":"Lacticigenium naphtae","marker":{"color":"#DA16FF","opacity":0.8,"pattern":{"shape":""}},"name":"Lacticigenium naphtae","offsetgroup":"Lacticigenium naphtae","orientation":"v","showlegend":true,"textposition":"auto","x":["Wastewater"],"xaxis":"x","y":[3.564261905868337],"yaxis":"y","type":"bar"},{"alignmentgroup":"True","hovertemplate":"Species=Acinetobacter lwoffii\u003cbr\u003eBiome=%{x}\u003cbr\u003eRelative Abundance=%{y}\u003cextra\u003e\u003c\u002fextra\u003e","legendgroup":"Acinetobacter lwoffii","marker":{"color":"#222A2A","opacity":0.8,"pattern":{"shape":""}},"name":"Acinetobacter lwoffii","offsetgroup":"Acinetobacter lwoffii","orientation":"v","showlegend":true,"textposition":"auto","x":["Water and sludge","Activated sludge"],"xaxis":"x","y":[22.216759870231286,6.556179296404087],"yaxis":"y","type":"bar"},{"alignmentgroup":"True","hovertemplate":"Species=Acinetobacter johnsonii\u003cbr\u003eBiome=%{x}\u003cbr\u003eRelative Abundance=%{y}\u003cextra\u003e\u003c\u002fextra\u003e","legendgroup":"Acinetobacter johnsonii","marker":{"color":"#B68100","opacity":0.8,"pattern":{"shape":""}},"name":"Acinetobacter johnsonii","offsetgroup":"Acinetobacter johnsonii","orientation":"v","showlegend":true,"textposition":"auto","x":["Water and sludge","Activated sludge"],"xaxis":"x","y":[17.398965414227387,3.568392981088881],"yaxis":"y","type":"bar"},{"alignmentgroup":"True","hovertemplate":"Species=Pseudomonas fragi\u003cbr\u003eBiome=%{x}\u003cbr\u003eRelative Abundance=%{y}\u003cextra\u003e\u003c\u002fextra\u003e","legendgroup":"Pseudomonas fragi","marker":{"color":"#750D86","opacity":0.8,"pattern":{"shape":""}},"name":"Pseudomonas fragi","offsetgroup":"Pseudomonas fragi","orientation":"v","showlegend":true,"textposition":"auto","x":["Water and sludge"],"xaxis":"x","y":[6.006781935105162],"yaxis":"y","type":"bar"},{"alignmentgroup":"True","hovertemplate":"Species=Faecalibacterium prausnitzii\u003cbr\u003eBiome=%{x}\u003cbr\u003eRelative Abundance=%{y}\u003cextra\u003e\u003c\u002fextra\u003e","legendgroup":"Faecalibacterium prausnitzii","marker":{"color":"#EB663B","opacity":0.8,"pattern":{"shape":""}},"name":"Faecalibacterium prausnitzii","offsetgroup":"Faecalibacterium prausnitzii","orientation":"v","showlegend":true,"textposition":"auto","x":["Water and sludge"],"xaxis":"x","y":[5.9847694718581135],"yaxis":"y","type":"bar"},{"alignmentgroup":"True","hovertemplate":"Species=Prevotella copri\u003cbr\u003eBiome=%{x}\u003cbr\u003eRelative Abundance=%{y}\u003cextra\u003e\u003c\u002fextra\u003e","legendgroup":"Prevotella copri","marker":{"color":"#511CFB","opacity":0.8,"pattern":{"shape":""}},"name":"Prevotella copri","offsetgroup":"Prevotella copri","orientation":"v","showlegend":true,"textposition":"auto","x":["Water and sludge"],"xaxis":"x","y":[3.250297430306969],"yaxis":"y","type":"bar"},{"alignmentgroup":"True","hovertemplate":"Species=Propionibacterium acnes\u003cbr\u003eBiome=%{x}\u003cbr\u003eRelative Abundance=%{y}\u003cextra\u003e\u003c\u002fextra\u003e","legendgroup":"Propionibacterium acnes","marker":{"color":"#00A08B","opacity":0.8,"pattern":{"shape":""}},"name":"Propionibacterium acnes","offsetgroup":"Propionibacterium acnes","orientation":"v","showlegend":true,"textposition":"auto","x":["Industrial wastewater"],"xaxis":"x","y":[17.857995683731996],"yaxis":"y","type":"bar"},{"alignmentgroup":"True","hovertemplate":"Species=Klebsiella oxytoca\u003cbr\u003eBiome=%{x}\u003cbr\u003eRelative Abundance=%{y}\u003cextra\u003e\u003c\u002fextra\u003e","legendgroup":"Klebsiella oxytoca","marker":{"color":"#FB00D1","opacity":0.8,"pattern":{"shape":""}},"name":"Klebsiella oxytoca","offsetgroup":"Klebsiella oxytoca","orientation":"v","showlegend":true,"textposition":"auto","x":["Industrial wastewater"],"xaxis":"x","y":[8.008524404035125],"yaxis":"y","type":"bar"},{"alignmentgroup":"True","hovertemplate":"Species=Erwinia dispersa\u003cbr\u003eBiome=%{x}\u003cbr\u003eRelative Abundance=%{y}\u003cextra\u003e\u003c\u002fextra\u003e","legendgroup":"Erwinia dispersa","marker":{"color":"#FC0080","opacity":0.8,"pattern":{"shape":""}},"name":"Erwinia dispersa","offsetgroup":"Erwinia dispersa","orientation":"v","showlegend":true,"textposition":"auto","x":["Industrial wastewater"],"xaxis":"x","y":[7.385864447558245],"yaxis":"y","type":"bar"},{"alignmentgroup":"True","hovertemplate":"Species=Enterobacter cloacae\u003cbr\u003eBiome=%{x}\u003cbr\u003eRelative Abundance=%{y}\u003cextra\u003e\u003c\u002fextra\u003e","legendgroup":"Enterobacter cloacae","marker":{"color":"#B2828D","opacity":0.8,"pattern":{"shape":""}},"name":"Enterobacter cloacae","offsetgroup":"Enterobacter cloacae","orientation":"v","showlegend":true,"textposition":"auto","x":["Industrial wastewater"],"xaxis":"x","y":[6.362665633405571],"yaxis":"y","type":"bar"},{"alignmentgroup":"True","hovertemplate":"Species=Hafnia alvei\u003cbr\u003eBiome=%{x}\u003cbr\u003eRelative Abundance=%{y}\u003cextra\u003e\u003c\u002fextra\u003e","legendgroup":"Hafnia alvei","marker":{"color":"#6C7C32","opacity":0.8,"pattern":{"shape":""}},"name":"Hafnia alvei","offsetgroup":"Hafnia alvei","orientation":"v","showlegend":true,"textposition":"auto","x":["Industrial wastewater"],"xaxis":"x","y":[5.679181440948678],"yaxis":"y","type":"bar"},{"alignmentgroup":"True","hovertemplate":"Species=Thiothrix eikelboomii\u003cbr\u003eBiome=%{x}\u003cbr\u003eRelative Abundance=%{y}\u003cextra\u003e\u003c\u002fextra\u003e","legendgroup":"Thiothrix eikelboomii","marker":{"color":"#778AAE","opacity":0.8,"pattern":{"shape":""}},"name":"Thiothrix eikelboomii","offsetgroup":"Thiothrix eikelboomii","orientation":"v","showlegend":true,"textposition":"auto","x":["Activated sludge"],"xaxis":"x","y":[22.736084558151994],"yaxis":"y","type":"bar"},{"alignmentgroup":"True","hovertemplate":"Species=Streptococcus mutans\u003cbr\u003eBiome=%{x}\u003cbr\u003eRelative Abundance=%{y}\u003cextra\u003e\u003c\u002fextra\u003e","legendgroup":"Streptococcus mutans","marker":{"color":"#862A16","opacity":0.8,"pattern":{"shape":""}},"name":"Streptococcus mutans","offsetgroup":"Streptococcus mutans","orientation":"v","showlegend":true,"textposition":"auto","x":["Activated sludge"],"xaxis":"x","y":[10.379561866026961],"yaxis":"y","type":"bar"},{"alignmentgroup":"True","hovertemplate":"Species=Sphaerotilus montanus\u003cbr\u003eBiome=%{x}\u003cbr\u003eRelative Abundance=%{y}\u003cextra\u003e\u003c\u002fextra\u003e","legendgroup":"Sphaerotilus montanus","marker":{"color":"#A777F1","opacity":0.8,"pattern":{"shape":""}},"name":"Sphaerotilus montanus","offsetgroup":"Sphaerotilus montanus","orientation":"v","showlegend":true,"textposition":"auto","x":["Activated sludge"],"xaxis":"x","y":[3.7716296684161175],"yaxis":"y","type":"bar"}],"layout":{"template":{"data":{"candlestick":[{"decreasing":{"line":{"color":"#000033"}},"increasing":{"line":{"color":"#000032"}},"type":"candlestick"}],"contourcarpet":[{"colorscale":[[0.0,"#000011"],[0.1111111111111111,"#000012"],[0.2222222222222222,"#000013"],[0.3333333333333333,"#000014"],[0.4444444444444444,"#000015"],[0.5555555555555556,"#000016"],[0.6666666666666666,"#000017"],[0.7777777777777778,"#000018"],[0.8888888888888888,"#000019"],[1.0,"#000020"]],"type":"contourcarpet"}],"contour":[{"colorscale":[[0.0,"#000011"],[0.1111111111111111,"#000012"],[0.2222222222222222,"#000013"],[0.3333333333333333,"#000014"],[0.4444444444444444,"#000015"],[0.5555555555555556,"#000016"],[0.6666666666666666,"#000017"],[0.7777777777777778,"#000018"],[0.8888888888888888,"#000019"],[1.0,"#000020"]],"type":"contour"}],"heatmap":[{"colorscale":[[0.0,"#000011"],[0.1111111111111111,"#000012"],[0.2222222222222222,"#000013"],[0.3333333333333333,"#000014"],[0.4444444444444444,"#000015"],[0.5555555555555556,"#000016"],[0.6666666666666666,"#000017"],[0.7777777777777778,"#000018"],[0.8888888888888888,"#000019"],[1.0,"#000020"]],"type":"heatmap"}],"histogram2d":[{"colorscale":[[0.0,"#000011"],[0.1111111111111111,"#000012"],[0.2222222222222222,"#000013"],[0.3333333333333333,"#000014"],[0.4444444444444444,"#000015"],[0.5555555555555556,"#000016"],[0.6666666666666666,"#000017"],[0.7777777777777778,"#000018"],[0.8888888888888888,"#000019"],[1.0,"#000020"]],"type":"histogram2d"}],"icicle":[{"textfont":{"color":"white"},"type":"icicle"}],"sankey":[{"textfont":{"color":"#000036"},"type":"sankey"}],"scatter":[{"marker":{"line":{"width":0}},"type":"scatter"}],"table":[{"cells":{"fill":{"color":"#000038"},"font":{"color":"#000037"},"line":{"color":"#000039"}},"header":{"fill":{"color":"#000040"},"font":{"color":"#000036"},"line":{"color":"#000039"}},"type":"table"}],"waterfall":[{"connector":{"line":{"color":"#000036","width":2}},"decreasing":{"marker":{"color":"#000033"}},"increasing":{"marker":{"color":"#000032"}},"totals":{"marker":{"color":"#000034"}},"type":"waterfall"}]},"layout":{"coloraxis":{"colorscale":[[0.0,"#000011"],[0.1111111111111111,"#000012"],[0.2222222222222222,"#000013"],[0.3333333333333333,"#000014"],[0.4444444444444444,"#000015"],[0.5555555555555556,"#000016"],[0.6666666666666666,"#000017"],[0.7777777777777778,"#000018"],[0.8888888888888888,"#000019"],[1.0,"#000020"]]},"colorscale":{"diverging":[[0.0,"#000021"],[0.1,"#000022"],[0.2,"#000023"],[0.3,"#000024"],[0.4,"#000025"],[0.5,"#000026"],[0.6,"#000027"],[0.7,"#000028"],[0.8,"#000029"],[0.9,"#000030"],[1.0,"#000031"]],"sequential":[[0.0,"#000011"],[0.1111111111111111,"#000012"],[0.2222222222222222,"#000013"],[0.3333333333333333,"#000014"],[0.4444444444444444,"#000015"],[0.5555555555555556,"#000016"],[0.6666666666666666,"#000017"],[0.7777777777777778,"#000018"],[0.8888888888888888,"#000019"],[1.0,"#000020"]],"sequentialminus":[[0.0,"#000011"],[0.1111111111111111,"#000012"],[0.2222222222222222,"#000013"],[0.3333333333333333,"#000014"],[0.4444444444444444,"#000015"],[0.5555555555555556,"#000016"],[0.6666666666666666,"#000017"],[0.7777777777777778,"#000018"],[0.8888888888888888,"#000019"],[1.0,"#000020"]]},"colorway":["#000001","#000002","#000003","#000004","#000005","#000006","#000007","#000008","#000009","#000010"]}},"xaxis":{"anchor":"y","domain":[0.0,1.0],"title":{"text":"Biome","font":{"size":20}},"tickfont":{"size":18},"showgrid":false},"yaxis":{"anchor":"x","domain":[0.0,1.0],"title":{"text":"Relative abundance (%)","font":{"size":20}},"tickfont":{"size":18},"showgrid":false},"legend":{"title":{"text":"Species","font":{"size":24}},"tracegroupgap":0,"font":{"size":20}},"margin":{"t":40,"l":40,"r":40,"b":40},"barmode":"relative"}}