This repository was archived by the owner on May 3, 2023. It is now read-only.

Description
This means using:
[] using pyimagej not in interactive mode
[] write bash scripts for conda constructor
Avoiding pyimagej interactive is the crucial part. Directions given by Curtis:
https://github.com/imagej/pyimagej/commit/34ca3e67837013379d9f123d6fbf9571a8ee10a6
https://github.com/imagej/napari-imagej/commit/b6ec9c69ae1fed1dabe2b1a6df6514bf2bfc2008?w=1
Is how I did it for napari-imagej. But I think this won't work for your use case because your code needs to continue on the main thread, no? So then we are looking at another option, which I haven't coded yet: pass the rest of your code to a new callback function that PyImageJ calls after doing ij.ui().showUI() in GUI mode.