Refactor analysis #14
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added 10 commits
August 21, 2016 18:00
Refactored to move sorting to base function 'Visualize'.
Refactored clustering to move feature selection outside of function.
Made obsolete by Visualize.py that contains all visualization functions.
Made obsolete by Visualization.py, FeatureAnalysis.py and PathwayAnalysis.py
Refactored to remove functions for analysis. Updated layout to improve longer axes labels.
Performs gene set enrichment analysis of risk gradients and generates visualizations.
Performs risk gradient analysis of models and generates visualizations.
Used for reading in Gene Matrix Transposed files for pathway analysis.
Performs single-sample gene set enrichment analysis.
Updated for refactoring analysis code and addition of new functions/files.
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Refactored analysis submodule and added GSEA analysis.