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@safooray safooray commented Sep 6, 2017

Lee, please take a look at my changes. Major changes include:

  • Moving the definition of 'Unique' to outside of conditional statement in FMPlots in Visualisation.py
  • Saving the model in Run.py
  • Specifying datatype of X in ModelAnalysis to fix conversion error

The following warnings remain to be fixed:

`Generating cluster analysis...
/home/syouse3/.local/lib/python2.7/site-packages/matplotlib/axes/_base.py:2809: UserWarning: Attempting to set identical bottom==top results
in singular transformations; automatically expanding.
bottom=-0.5, top=-0.5
'bottom=%s, top=%s') % (bottom, top))

Generating Kaplan-Meier plots...

Saving figures...
/home/syouse3/.local/lib/python2.7/site-packages/matplotlib/collections.py:590: FutureWarning: elementwise comparison failed; returning scalar instead, but in the future will perform elementwise comparison
if self._edgecolors == str('face'):
/home/syouse3/.local/lib/python2.7/site-packages/matplotlib/axis.py:1024: UserWarning: Unable to find pixel distance along axis for interval padding of ticks; assuming no interval padding needed.
needed.")

/home/syouse3/.local/lib/python2.7/site-packages/matplotlib/axis.py:1034: UserWarning: Unable to find pixel distance along axis for interval padding of ticks; assuming no interval padding needed.
needed.")
`

@safooray safooray requested a review from cooperlab September 6, 2017 14:04
@cooperlab cooperlab merged commit 890eb88 into master Sep 6, 2017
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3 participants