Closed Mar 30, 2015
Due by January 31, 2011
•Closed Premerge BioPAX L3 Data
Goal
Download and premerge Nature PID, Nature Molecules, HumanCyc, and MouseCyc pathways. Identify validation errors and report back to the provider. There is also a google document to update about the issues and progress.
Tasks
| ID | NAME | DESCRIPTION | ETA | OWNER | STATUS | WEEK#3 | WEEK#4 | WEEK#5 | WEEK#6 |
|---|---|---|---|---|---|---|---|---|---|
| 1 | NCI/Nature PID Data Premerge | Get and premerge (convert, normalize, validate, save) pathways. Identify validation errors and report back to provider. | 2.5 days | Igor | Expected a new data release | Trying the available data again; reporting in more detail | data was updated; checking... | ||
| 2 | UCSD Nature SIG Molecule Pages Data Premerge | Get and premerge (convert, normalize, validate, save) pathways. Identify validation errors and report back to provider. | 2.5 days | Igor | Modified the Fetcher (to detect biopax files w/o .owl or .xml extension in the zip archive), contacted the provider for the first time (Ashok) | ||||
| 3 | HumanCyc Data Premerge | Get and premerge (convert, normalize, validate, save) pathways. Identify validation errors and report back to provider. | 2.5 days | Ben | Premerge attempted. Seven critical issues exist (see issues google document). | Suzanne Paley notified of critical issues. Waiting for response. | |||
| 4 | MouseCyc Data Premerge | Get and premerge (convert, normalize, validate, save) pathways. Identify validation errors and report back to provider. | 2.5 days | Ben | Premerge has been attempted. MouseCyc data is missing pathways. Several minor issues as well (see issues google document). | Carol Bult team working on fixes. |
Dates
- Start - January 13, 2010
- End - January 21, 2011
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