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cPath2 v6.0.0 and PC2 v6

Closed
Due by December 24, 2014
Closed Mar 19, 2015

Goal

  1. cPath2 v6.0.0 software (store/index the BioPAX model not using H2/Hibernate db);
  2. PC2 v6 release (web services and data, Human only);
  3. PC Downloads and Archives.

Details

  • update all warehouse and pathway data sources;
  • issue #191 (our GSEA .gmt format);
  • issue #192 (URI clash in PANTHER data);
  • issue #180 (Downloads/Archives links - main PC web site);
  • issue #182 (report the approx. sub-network size);
  • test;
  • update the Virtuoso SPARQL, FCT (load new BioPAX RDF/XML graph into the quad store);
  • archive and replace PC2 v5 on the production server;
  • update PURLs;
  • announce.
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