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Fixes #1139 .

Description

  • Fix bug in validation
  • Add text to remind opening port 53800 for using AIM UI in notebook
  • Add license and rearrange cells to follow contributing guidelines

Checks

  • Avoid including large-size files in the PR.
  • Clean up long text outputs from code cells in the notebook.
  • For security purposes, please check the contents and remove any sensitive info such as user names and private key.
  • Ensure (1) hyperlinks and markdown anchors are working (2) use relative paths for tutorial repo files (3) put figure and graphs in the ./figure folder
  • Notebook runs automatically ./runner.sh -t "3d_segmentation/spleen_segmentation_3d_visualization_basic.ipynb"

Signed-off-by: Mingxin Zheng <18563433+mingxin-zheng@users.noreply.github.com>
Signed-off-by: Mingxin Zheng <18563433+mingxin-zheng@users.noreply.github.com>
Signed-off-by: Mingxin Zheng <18563433+mingxin-zheng@users.noreply.github.com>
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@mingxin-zheng mingxin-zheng requested a review from wyli January 6, 2023 16:56
@mingxin-zheng
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By the way, this notebook runs fine with papermill. We now exclude it from the integration test. Should we try to add it back? @wyli

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looks good, i think it's fine to skip the nightly test for this notebook

@wyli wyli merged commit 69bb657 into Project-MONAI:main Jan 6, 2023
@mingxin-zheng mingxin-zheng deleted the fix-1139 branch March 22, 2023 10:05
boneseva pushed a commit to boneseva/MONAI-tutorials that referenced this pull request Apr 21, 2024
Fixes Project-MONAI#1139 .

### Description
- Fix bug in validation
- Add text to remind opening port 53800 for using AIM UI in notebook
- Add license and rearrange cells to follow contributing guidelines

### Checks
<!--- Put an `x` in all the boxes that apply, and remove the not
applicable items -->
- [x] Avoid including large-size files in the PR.
- [x] Clean up long text outputs from code cells in the notebook.
- [x] For security purposes, please check the contents and remove any
sensitive info such as user names and private key.
- [x] Ensure (1) hyperlinks and markdown anchors are working (2) use
relative paths for tutorial repo files (3) put figure and graphs in the
`./figure` folder
- [x] Notebook runs automatically `./runner.sh -t
"3d_segmentation/spleen_segmentation_3d_visualization_basic.ipynb"`

Signed-off-by: Mingxin Zheng <18563433+mingxin-zheng@users.noreply.github.com>
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Bug on spleen_segmentation_3d_visualization_basic.ipynb

2 participants