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@mingxin-zheng mingxin-zheng commented Oct 18, 2022

Signed-off-by: Mingxin Zheng 18563433+mingxin-zheng@users.noreply.github.com

Fixes #993 ,
Fixes #992 ,
Fixes #972 .

Description

With the recent updates in MONAI core and research contributions, we are able to fit all models for smaller datasets. Therefore, I suggest changing all the datasets from the MSD task 09 to task 04, which has much smaller size and easier to run on different machines. Notebooks are tested on two RTX 3080Ti with 12GB of mem in each.

Checks

  • Notebook runs automatically ./runner [-p <regex_pattern>]

Signed-off-by: Mingxin Zheng <18563433+mingxin-zheng@users.noreply.github.com>
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@mingxin-zheng mingxin-zheng changed the title change datasets from task 09 to 04 for all auto3dseg notebook change datasets from task 09 to 04 for all auto3dseg notebooks Oct 18, 2022
pre-commit-ci bot and others added 6 commits October 18, 2022 09:12
Signed-off-by: Mingxin Zheng <18563433+mingxin-zheng@users.noreply.github.com>
Signed-off-by: Mingxin Zheng <18563433+mingxin-zheng@users.noreply.github.com>
@wyli wyli enabled auto-merge (squash) October 18, 2022 14:42
@wyli wyli merged commit 283d5f5 into Project-MONAI:main Oct 18, 2022
@mingxin-zheng mingxin-zheng deleted the change_datasets_auto3dseg branch March 22, 2023 10:05
boneseva pushed a commit to boneseva/MONAI-tutorials that referenced this pull request Apr 21, 2024
…ct-MONAI#997)

Signed-off-by: Mingxin Zheng
<18563433+mingxin-zheng@users.noreply.github.com>

Fixes Project-MONAI#993 , 
Fixes Project-MONAI#992 , 
Fixes Project-MONAI#972 .

### Description
With the recent updates in MONAI core and research contributions, we are
able to fit all models for smaller datasets. Therefore, I suggest
changing all the datasets from the MSD task 09 to task 04, which has
much smaller size and easier to run on different machines. Notebooks are
tested on two RTX 3080Ti with 12GB of mem in each.


### Checks
<!--- Put an `x` in all the boxes that apply, and remove the not
applicable items -->
- [ ] Notebook runs automatically `./runner [-p <regex_pattern>]`

Signed-off-by: Mingxin Zheng <18563433+mingxin-zheng@users.noreply.github.com>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
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auto3dseg_autorunner_ref_api error CalledProcessError test error auto3dseg_autorunner_ref_api

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