Running clustermaker with only selected nodess selected doesn't work

[risserlin]

Running clustermaker with only selected nodess selected doesn't work

Clustermaker2 version 0.94
Cytoscape 3.2.1

Stack:
java.lang.ArrayIndexOutOfBoundsException: 0
at edu.ucsf.rbvi.clusterMaker2.internal.algorithms.networkClusterers.MCL.RunMCL.create2DMatrix(RunMCL.java:347)
at edu.ucsf.rbvi.clusterMaker2.internal.algorithms.networkClusterers.MCL.RunMCL.multiplyMatrix(RunMCL.java:343)
at edu.ucsf.rbvi.clusterMaker2.internal.algorithms.networkClusterers.MCL.RunMCL.run(RunMCL.java:117)
at edu.ucsf.rbvi.clusterMaker2.internal.algorithms.networkClusterers.MCL.MCLCluster.run(MCLCluster.java:86)
at org.cytoscape.work.internal.task.JDialogTaskManager$TaskRunnable.innerRun(JDialogTaskManager.java:321)
at org.cytoscape.work.internal.task.JDialogTaskManager$TaskRunnable.run(JDialogTaskManager.java:350)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:471)
at java.util.concurrent.FutureTask.run(FutureTask.java:262)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at java.lang.Thread.run(Thread.java:745)

[risserlin]

this might have something to do with deleted edges. I got the same error above when I re-ran clustering without using the selected nodes option.

I saved the session and reopened it and both clustering and only selected nodes worked fine.

In the previous session I deleted a bunch of edges before trying to cluster when I got that error.