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The migration will create a SpBaseContext class with a repository for each list. EG:
public class SpContext : SpproBaseContext
{
public SpContext(ClientContext clientContext) : base(clientContext)
{
}
public virtual SpproDocLibraryRepository<MyDocLibrary> MyDocLibrary{ get; set; } //Current version of migration will not automatically set Repository to SpproDocLibrary, this will need to be edited manually
public virtual SpproRepository<MyList> MyList { get; set; }
}