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feat: add Smith-Waterman algorithm for local sequence alignment #960

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Merged
siriak merged 5 commits into from
Dec 6, 2025
Merged

feat: add Smith-Waterman algorithm for local sequence alignment #960

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91fa3f4
feat: add Smith-Waterman algorithm for local sequence alignment
AliAlimohammadi Dec 5, 2025
ca1dd1e
Update DIRECTORY.md to fix ordering.
AliAlimohammadi Dec 5, 2025
3fcaa85
Merge branch 'TheAlgorithms:master' into feat/smith-waterman-algorithm
AliAlimohammadi Dec 5, 2025
2eea7a4
Fix: address Copilot feedback - custom scoring, efficiency, and edge …
AliAlimohammadi Dec 5, 2025
7a849ee
Fix: cargo fmt
AliAlimohammadi Dec 5, 2025
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3 changes: 2 additions & 1 deletion DIRECTORY.md
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Original file line number Diff line number Diff line change
Expand Up @@ -103,10 +103,11 @@
* [Minimum Cost Path](https://github.com/TheAlgorithms/Rust/blob/master/src/dynamic_programming/minimum_cost_path.rs)
* [Optimal Bst](https://github.com/TheAlgorithms/Rust/blob/master/src/dynamic_programming/optimal_bst.rs)
* [Rod Cutting](https://github.com/TheAlgorithms/Rust/blob/master/src/dynamic_programming/rod_cutting.rs)
* [Smith-Waterman](https://github.com/TheAlgorithms/Rust/blob/master/src/dynamic_programming/smith_waterman.rs)
* [Snail](https://github.com/TheAlgorithms/Rust/blob/master/src/dynamic_programming/snail.rs)
* [Subset Generation](https://github.com/TheAlgorithms/Rust/blob/master/src/dynamic_programming/subset_generation.rs)
* [Task Assignment](https://github.com/TheAlgorithms/Rust/blob/master/src/dynamic_programming/task_assignment.rs)
* [Subset Sum](https://github.com/TheAlgorithms/Rust/blob/master/src/dynamic_programming/subset_sum.rs)
* [Task Assignment](https://github.com/TheAlgorithms/Rust/blob/master/src/dynamic_programming/task_assignment.rs)
* [Trapped Rainwater](https://github.com/TheAlgorithms/Rust/blob/master/src/dynamic_programming/trapped_rainwater.rs)
* [Word Break](https://github.com/TheAlgorithms/Rust/blob/master/src/dynamic_programming/word_break.rs)
* Financial
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2 changes: 2 additions & 0 deletions src/dynamic_programming/mod.rs
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Expand Up @@ -14,6 +14,7 @@ mod maximum_subarray;
mod minimum_cost_path;
mod optimal_bst;
mod rod_cutting;
mod smith_waterman;
mod snail;
mod subset_generation;
mod subset_sum;
Expand Down Expand Up @@ -45,6 +46,7 @@ pub use self::maximum_subarray::maximum_subarray;
pub use self::minimum_cost_path::minimum_cost_path;
pub use self::optimal_bst::optimal_search_tree;
pub use self::rod_cutting::rod_cut;
pub use self::smith_waterman::{score_function, smith_waterman, traceback};
pub use self::snail::snail;
pub use self::subset_generation::list_subset;
pub use self::subset_sum::is_sum_subset;
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