Support reading dense tensors from sparse arrays #187
Merged
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
As mentioned in the #167 description, the
TensorKindabstraction allows decoupling the TileDB array flavor (dense or sparse) from the generated tensor kind. This PR enables generating dense tensors from sparse TileDB arrays by passingtensor_kind=TensorKind.DENSEto theArrayParamsof a sparse array.The actual implementation is contained in a single commit (56599f6) that:
TensorSchemaFactoriesmapping to depend on the array flavor (in addition to the tensor kind).SparseToDenseTensorSchemafactory that maps sparse arrays generated bySparseTensorSchemato (dense) Numpy arrays.MappedTensorSchemapickleable (required fornum_workers>0)