The ViennaRNA Package
RNAblueprint library for uniform sampling of RNA sequences given structural and sequence constraints
nextstrain.org community build: Molecular epidemiology of Chikungunya virus
An RNA manipulation library.
RNAxplorer - Explore the RNA conformation space through sampling and other techniques
RNAcode - Detecting protein coding genes in multiple sequence alignment
Create force-directed graphs of RNA secondary structures.
A collection of functionality for manipulating RNA secondary structures.
A container for the forna visualization software.
A pipeline for simulation of RNA folding on dynamic landscapes
Compute local minima and energy barriers of a landscape
RNAz - predicting structural noncoding RNAs
SISSIz: Dinucleotide controlled random alignments and RNA gene prediction
Compute folding dynamics on coarse grained version of an energy landscape by numeric integration of a Markov process
Python wrapper to design RNA molecules using RNAblueprint, RNARedPrint and for energy evaluations ViennaRNA, Hotknots, pKiss and Nupack.
This is a script collection for Benchmarks and Plots for designing RNA molecules.
An enhanced RNA dotplot showing the associated structures.
A tool for aligning RNA secondary structures. It's user interface integrates to those of the tools of the ViennaRNA Package (http://www.tbi.univie.ac.at/RNA/).
A program to predict RNA folding trajectories and first passage times by connecting the denatured state with the predicted native structure through a series of intermediate states.
Additional Perl modules living in the namespace RNA. They augment the Perl 5 wrapped libRNA C-library of the ViennaRNA Package and are usually included in the ViennaRNA Package distribution.
RNA folding with soft constraints