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An RNA manipulation library.
The ViennaRNA Package
Compute local minima and energy barriers of a landscape
Python wrapper to design RNA molecules using RNAblueprint, ViennaRNA and Nupack.
Compute folding dynamics on coarse grained version of an energy landscape by numeric integration of a Markov process
A pipeline for simulation of RNA folding on dynamic landscapes
RNAblueprint library for uniform sampling of RNA sequences given structural and sequence constraints
This is a script collection for Benchmarks and Plots for designing RNA molecules.
A tool for aligning RNA secondary structures. It's user interface integrates to those of the tools of the ViennaRNA Package (http://www.tbi.univie.ac.at/RNA/).
A program to predict RNA folding trajectories and first passage times by connecting the denatured state with the predicted native structure through a series of intermediate states.
Additional Perl modules living in the namespace RNA. They augment the Perl 5 wrapped libRNA C-library of the ViennaRNA Package and are usually included in the ViennaRNA Package distribution.