Software and Documents from the Theoretical Biochemistry Institute, University of Vienna

  • An RNA manipulation library.

    Python 20 10 AGPL-3.0 Updated Aug 8, 2018
  • The ViennaRNA Package

    C 37 12 Updated Aug 8, 2018
  • Compute local minima and energy barriers of a landscape

    C 3 1 GPL-2.0 Updated Jul 25, 2018
  • Python wrapper to design RNA molecules using RNAblueprint, ViennaRNA and Nupack.

    Python 3 GPL-3.0 Updated May 2, 2018
  • Compute folding dynamics on coarse grained version of an energy landscape by numeric integration of a Markov process

    C 5 Updated Feb 22, 2018
  • A pipeline for simulation of RNA folding on dynamic landscapes

    Perl Updated Feb 20, 2018
  • RNAblueprint library for uniform sampling of RNA sequences given structural and sequence constraints

    C++ 2 GPL-3.0 Updated May 2, 2017
  • This is a script collection for Benchmarks and Plots for designing RNA molecules.

    Python GPL-3.0 Updated Apr 27, 2017
  • A tool for aligning RNA secondary structures. It's user interface integrates to those of the tools of the ViennaRNA Package (http://www.tbi.univie.ac.at/RNA/).

    C 2 Updated Oct 12, 2016
  • A program to predict RNA folding trajectories and first passage times by connecting the denatured state with the predicted native structure through a series of intermediate states.

    C++ 3 Updated Oct 12, 2016
  • Additional Perl modules living in the namespace RNA. They augment the Perl 5 wrapped libRNA C-library of the ViennaRNA Package and are usually included in the ViennaRNA Package distribution.

    Perl 2 Updated Oct 12, 2016