The ViennaRNA Package
An RNA manipulation library.
Python wrapper to design RNA molecules using RNAblueprint, ViennaRNA and Nupack.
Compute folding dynamics on coarse grained version of an energy landscape by numeric integration of a Markov process
A pipeline for simulation of RNA folding on dynamic landscapes
Compute local minima and energy barriers of a landscape
RNAblueprint library for uniform sampling of RNA sequences given structural and sequence constraints
This is a script collection for Benchmarks and Plots for designing RNA molecules.
A tool for aligning RNA secondary structures. It's user interface integrates to those of the tools of the ViennaRNA Package (http://www.tbi.univie.ac.at/RNA/).
A program to predict RNA folding trajectories and first passage times by connecting the denatured state with the predicted native structure through a series of intermediate states.
Additional Perl modules living in the namespace RNA. They augment the Perl 5 wrapped libRNA C-library of the ViennaRNA Package and are usually included in the ViennaRNA Package distribution.