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AI4S Skills — agent skills for AI for Science

Seven agent skills for AI-for-Science research — turn a research direction into literature surveys, runnable experiments, publication-grade papers, and integrity audits, with every citation, number, and figure traceable to its source.

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License: MIT 7 skills PRs Welcome linux.do


Contents

The skills

Skill Role Primary output
ai4s-agent Runs the four skills below in order the full package
research-explorer Explore topics from a broad direction research_exploration.md, topic_matrix.md, literature_pre_survey.md
literature-survey Write a literature survey 6–20 pp PDF, 60+ real citations, LaTeX source, taxonomy figures
experiment-suite Build an experiment package design doc, runnable code, results.json with provenance, figures, report
paper-writer Write a research paper 8–14 pp PDF, 200+ citations, 4–8 figures, tables
mindmap-render Render a mindmap image from a topic_matrix.md (Python script)
integrity-auditor Audit a paper's integrity image / numerical / logical findings, 4-level evidence grading, audit_report.md

Each skill is a folder with a SKILL.md plus its own references, templates, and tools. MIT-licensed; works with Claude Code, Cursor, Codex, and Aider.

How they connect

direction
   │
   ▼
[1] research-explorer ──▶ pick one $TOPIC
   │
   ├──▶ [2] literature-survey   → survey PDF + bibliography.bib
   ├──▶ [3] experiment-suite    → results.json + figures/
   └──▶ [4] paper-writer        → paper PDF  (reuses [2] and [3])

integrity-auditor ──▶ audits any paper: external PDF / DOI / arXiv, or [4]'s output

ai4s-agent runs steps 1–4 in order. Skills pass work to each other through a shared slug and the path output/<skill>/<slug>/latest/.

Authenticity

The focus of the project. Every skill enforces:

Principle In practice
Real citations Every BibTeX entry links to a URL the agent fetched in the same session; none from memory.
Labelled numbers Every number is marked measured, simulated, or illustrative; simulated values are never reported as measured.
Runnable experiments experiment-suite outputs runnable code and a results.json with provenance. Supply real results and they replace the simulated ones; the "simulated" disclosure is then removed.
Resumable runs Long tasks save progress after each step and continue from the last checkpoint, so a reported "done" reflects completed work.
Publication layout booktabs tables, [!t] floats, ~\cite{}; vector-PDF figures with embedded fonts and defined color palettes.
Review disclosure Every generated document states that domain-expert review is recommended.
Integrity checks integrity-auditor inspects a paper for image, numerical, and logical problems and grades the evidence.

Example

A complete run from experiment-suite + paper-writer: "Learning the Burgers Solution Operator with a Fourier Neural Operator" — an 8-page paper backed by code the agent wrote and ran. Full artifact in examples/fno-burgers/ (paper, code, results.json, report).

paper page 1 paper page 2 paper page 3
paper page 4 paper page 5 paper page 6
The 8-page paper (first 6 pages) — click any page for the full PDF.
  • Real code, really runmodel.py is a 1-D FNO; the full study runs in ~20 min on a laptop CPU.
  • Measured results — FNO 6.67% rel-L2 vs MLP 22.47% and CNN 68.12% (3 seeds); zero-shot super-resolution holds 6.7–8.1% from grid 128 to 1024.
  • Real citations — 22 references, each traceable to its source.

Every number is measured (provenance in results.json); the paper states it was AI-generated and recommends domain-expert review.

Install

Run the installer from the project you want the skills in:

git clone https://github.com/ai4s-research/ai4s-skills

cd /path/to/your-project
/path/to/ai4s-skills/install.sh                              # all skills → ./.claude/skills
/path/to/ai4s-skills/install.sh paper-writer                 # or specific ones
SKILLS_DIR=~/.claude/skills /path/to/ai4s-skills/install.sh  # global instead

To install by hand, copy any skills/<name>/ into ~/.claude/skills/ (global) or <project>/.claude/skills/ (project).

Usage

In Claude Code:

Use the literature-survey skill to write a survey on <your topic>.

With Cursor, Codex, or Aider, point the agent at the skill file:

Read skills/literature-survey/SKILL.md and its references/, then produce the survey
for "<your topic>" as specified.

Each SKILL.md directs the agent to read its references/ first; those files hold the procedures for bibliography expansion, figures, layout, and quality checks.

Repository layout

ai4s-skills/
├── skills/
│   ├── ai4s-agent/          SKILL.md + references/
│   ├── research-explorer/   SKILL.md
│   ├── literature-survey/   SKILL.md + references/ + templates/survey/
│   ├── experiment-suite/    SKILL.md + references/ + figure_examples/
│   ├── paper-writer/        SKILL.md + references/ + templates/paper/
│   ├── mindmap-render/      SKILL.md + scripts/ + tests/
│   └── integrity-auditor/   SKILL.md + references/ + forensics_tools/ + templates/ + tests/
├── tools/validate_skills.py   structure / frontmatter validator (run in CI)
├── install.sh
└── .github/workflows/ci.yml

Each SKILL.md carries YAML frontmatter (name, description) so an agent can find and route to it.

Included tools

Small, single-purpose scripts the skills call. Each directory has its own requirements.txt.

  • skills/integrity-auditor/forensics_tools/ — image duplication / ORB matching, panel splitting, channel checks, magnitude (Benford-style) consistency, decimal matching, spreadsheet aggregate consistency.
  • skills/experiment-suite/figure_examples/ — a matplotlib style kit (style_kit.py) and worked figure examples.
  • skills/mindmap-render/scripts/generate_mindmap.py.

Contributing

A new skill needs:

  1. skills/<name>/SKILL.md with name and description frontmatter (name = folder name).
  2. Optional references/, templates/, and tools.
  3. No import anthropic / import openai.
  4. python tools/validate_skills.py passing (CI runs it on every PR).

See CONTRIBUTING.md and the Code of Conduct.

License

MIT.

Outputs are drafts. Review by a domain expert is recommended before any citation, submission, or decision. Verify numbers, citations, and claims.

Acknowledgments

Thanks to linux.do — a vibrant tech community where this project is shared and discussed.

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Open-source agent skills for AI for Science: topic exploration, literature survey, experiments, paper writing, and integrity audit — driven by any coding agent.

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