Missing argument handling in cli.py #13
Description
In src/simplefold/utils/fasta_utils.py you gave hint for passing alternative directory for cache when calling the function download_fasta_utilities, but this option is missing in cli.py. Meanwhile, in the function predict_structures_from_fastas in src/simplefold/inference.py, the caching directory is hardcoded.
Suggest:
- Add the corresponding argument handling in
cli.py; - Change
cache = output_dir / "cache"to i.e.cache = output_dir / "cache" if cache is None else cache