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Added default docker option to avoid docker permission errors. #143

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Merged
merged 2 commits into from
Oct 9, 2018
Merged

Added default docker option to avoid docker permission errors. #143

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48a7200
Added default docker option to avoid docker permission errors.
ODiogoSilva Oct 8, 2018
242a3e6
Updated changelog
ODiogoSilva Oct 8, 2018
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1 change: 1 addition & 0 deletions changelog.md
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Expand Up @@ -6,6 +6,7 @@

- Added removal of duplicate IDs from `reads_download` component input.
- Added seed parameter to `downsample_fastq` component.
- Added default docker option to avoid docker permission errors.

### Bug fixes

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7 changes: 7 additions & 0 deletions flowcraft/nextflow.config
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Expand Up @@ -32,6 +32,13 @@ process {
container = "flowcraft/flowcraft_base:1.0.0-1"
}

docker {
// Added default docker option to avoid docker permission errors. See issue
// #142
runOptions = "-u \$(id -u):\$(id -g)"
}


executor {
$local {
cpus = 4
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