Format translation

RNAFile source = io.loadFile(Path.of("structure.bpseq"));
RNAFile translated = translator.translate(source, RNAFormat.DB);
 
System.out.println("New format: " + translated.getFormat());
translated.getContent().forEach(System.out::println);

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Querying Available Translations

Before translating, check which target formats are compatible with a given source:

List<RNAFormat> available = translator.getAvailableTranslations(RNAFormat.BPSEQ);
available.forEach(System.out::println);

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Batch Translation

Translate all loaded files at once using streams:

io.loadDirectory(Path.of("/data/bpseq/"));
 
List<RNAFile> translated = io.getLoadedRNAFiles().stream()
        .map(f -> translator.translate(f, RNAFormat.DB))
        .toList();

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See Also

• Supported Formats — format details and constraints
• Saving Files — write translated files to disk
• Examples
• Home