Integrated simulation, simulaton and analysis

.github/workflows/Linux_CI.yml

@@ -36,7 +36,7 @@ jobs:
         # stop the build if there are Python syntax errors or undefined names
         flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
         # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
-        flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
+#        flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
     - name: Test with pytest
       run: |
         pytest brainpy/

brainpy/__init__.py

@@ -29,7 +29,13 @@
 
 
 # toolboxes
-from . import connect, initialize, optimizers, measure, losses, datasets, inputs
+from . import (connect,  # synaptic connection
+               initialize,  # weight initialization
+               optimizers,  # gradient descent optimizers
+               losses,  # loss functions
+               measure,  # methods for data analysis
+               datasets,  # methods for generating data
+               inputs)  # methods for generating input currents
 
 
 # numerical integrators
@@ -45,6 +51,14 @@
 
 # dynamics simulation
 from . import dyn
+from .dyn import (channels,  # channel models
+                  layers,  # ANN layers
+                  networks,  # network models
+                  neurons,  # neuron groups
+                  rates,  # rate models
+                  synapses,  # synaptic dynamics
+                  synouts,   # synaptic output
+                  synplast)  # synaptic plasticity
 
 
 # dynamics training
@@ -63,10 +77,6 @@
 from .visualization import visualize
 
 
-# compatible interface
-from .compat import *  # compat
-
-
 # convenient access
 conn = connect
 init = initialize

brainpy/train/algorithms/__init__.py → brainpy/algorithms/__init__.py

@@ -2,3 +2,4 @@
 
 from .offline import *
 from .online import *
+from . import utils