Updating apis for connections and operation registeration

.github/workflows/Linux_CI.yml

@@ -28,15 +28,14 @@ jobs:
       run: |
         python -m pip install --upgrade pip
         python -m pip install flake8 pytest
-        # python -m pip install https://github.com/google/jax/archive/refs/tags/jax-v0.3.14.tar.gz
         if [ -f requirements-dev.txt ]; then pip install -r requirements-dev.txt; fi
         python setup.py install
     - name: Lint with flake8
       run: |
         # stop the build if there are Python syntax errors or undefined names
         flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
         # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
-        # flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
+        flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
     - name: Test with pytest
       run: |
         pytest brainpy/

.github/workflows/MacOS_CI.yml

@@ -28,16 +28,14 @@ jobs:
       run: |
         python -m pip install --upgrade pip
         python -m pip install flake8 pytest
-        python -m pip install jax==0.3.14
-        python -m pip install jaxlib==0.3.14
         if [ -f requirements-dev.txt ]; then pip install -r requirements-dev.txt; fi
         python setup.py install
     - name: Lint with flake8
       run: |
         # stop the build if there are Python syntax errors or undefined names
         flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
         # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
-        # flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
+        flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
     - name: Test with pytest
       run: |
         pytest brainpy/

.github/workflows/Windows_CI.yml

@@ -39,7 +39,7 @@ jobs:
         # stop the build if there are Python syntax errors or undefined names
         flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
         # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
-        # flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
+        flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
     - name: Test with pytest
       run: |
         pytest brainpy/

brainpy/connect/base.py

@@ -116,13 +116,13 @@ def build_conn(self):
 
         import brainpy as bp
         class MyConnector(bp.conn.TwoEndConnector):
-          def build_mat(self, pre_size, post_size):
+          def build_mat(self, ):
             return conn_matrix
 
-          def build_csr(self, pre_size, post_size):
+          def build_csr(self, ):
             return post_ids, inptr
 
-          def build_coo(self, pre_size, post_size):
+          def build_coo(self, ):
             return pre_ids, post_ids
 
   """
@@ -196,8 +196,6 @@ def check(self, structures: Union[Tuple, List, str]):
         raise ConnectorError(f'Unknown synapse structure "{n}". '
                              f'Only {SUPPORTED_SYN_STRUCTURE} is supported.')
 
-
-
   def _return_by_mat(self, structures, mat, all_data: dict):
     assert mat.ndim == 2
     if (CONN_MAT in structures) and (CONN_MAT not in all_data):
@@ -332,70 +330,56 @@ def build_conn(self):
     """
     pass
 
-  def require(self, *sizes_or_structures):
-    sizes_or_structures = list(sizes_or_structures)
-    pre_size = sizes_or_structures.pop(0) if len(sizes_or_structures) >= 1 else None
-    post_size = sizes_or_structures.pop(0) if len(sizes_or_structures) >= 1 else None
-    structures = sizes_or_structures
-    if isinstance(post_size, str):
-      structures.insert(0, post_size)
-      post_size = None
-    if isinstance(pre_size, str):
-      structures.insert(0, pre_size)
-      pre_size = None
-
-    version2_style = (pre_size is not None) and (post_size is not None)
-    if not version2_style:
-      try:
-        assert self.pre_num is not None and self.post_num is not None
-      except AssertionError:
-        raise ConnectorError(f'self.pre_num or self.post_num is not defined. '
-                             f'Please use self.__call__(pre_size, post_size) '
-                             f'before requiring connection data.')
-      if pre_size is None:
-        pre_size = self.pre_size
-      if post_size is None:
-        post_size = self.post_size
+  def require(self, *structures):
+    try:
+      assert self.pre_num is not None and self.post_num is not None
+    except AssertionError:
+      raise ConnectorError(f'self.pre_num or self.post_num is not defined. '
+                           f'Please use self.__call__() '
+                           f'before requiring connection data.')
 
     self.check(structures)
     if self.is_version2_style:
       if len(structures) == 1:
         if PRE2POST in structures and not hasattr(self.build_csr, 'not_customized'):
-          return self.build_csr(pre_size, post_size)
+          r = self.build_csr()
+          return bm.asarray(r[0], dtype=IDX_DTYPE), bm.asarray(r[1], dtype=IDX_DTYPE)
         elif CONN_MAT in structures and not hasattr(self.build_mat, 'not_customized'):
-          return self.build_mat(pre_size, post_size)
+          return bm.asarray(self.build_mat(), dtype=MAT_DTYPE)
         elif PRE_IDS in structures and not hasattr(self.build_coo, 'not_customized'):
-          return self.build_coo(pre_size, post_size)[0]
+          return bm.asarray(self.build_coo()[0], dtype=IDX_DTYPE)
         elif POST_IDS in structures and not hasattr(self.build_coo, 'not_customized'):
-          return self.build_coo(pre_size, post_size)[1]
+          return bm.asarray(self.build_coo()[1], dtype=IDX_DTYPE)
       elif len(structures) == 2:
         if PRE_IDS in structures and POST_IDS in structures and not hasattr(self.build_coo, 'not_customized'):
-          return self.build_coo(pre_size, post_size)
+          r = self.build_coo()
+          return bm.asarray(r[0], dtype=IDX_DTYPE), bm.asarray(r[1], dtype=IDX_DTYPE)
 
       conn_data = dict(csr=None, ij=None, mat=None)
       if not hasattr(self.build_coo, 'not_customized'):
-        conn_data['ij'] = self.build_coo(pre_size, post_size)
+        conn_data['ij'] = self.build_coo()
       elif not hasattr(self.build_csr, 'not_customized'):
-        conn_data['csr'] = self.build_csr(pre_size, post_size)
+        conn_data['csr'] = self.build_csr()
       elif not hasattr(self.build_mat, 'not_customized'):
-        conn_data['mat'] = self.build_mat(pre_size, post_size)
+        conn_data['mat'] = self.build_mat()
+
     else:
       conn_data = self.build_conn()
     return self.make_returns(structures, conn_data)
 
-  def requires(self, *sizes_or_structures):
-    return self.require(*sizes_or_structures)
+  def requires(self, *structures):
+    return self.require(*structures)
 
   @tools.not_customized
-  def build_mat(self, pre_size=None, post_size=None):
+  def build_mat(self):
     pass
 
   @tools.not_customized
-  def build_csr(self, pre_size=None, post_size=None):
+  def build_csr(self):
     pass
 
   @tools.not_customized
-  def build_coo(self, pre_size=None, post_size=None):
+  def build_coo(self):
     pass
 
 
@@ -425,7 +409,6 @@ def __call__(self, pre_size, post_size=None):
     else:
       post_size = tuple(post_size)
     self.pre_size, self.post_size = pre_size, post_size
-
     self.pre_num = tools.size2num(self.pre_size)
     self.post_num = tools.size2num(self.post_size)
     return self

brainpy/connect/custom_conn.py

@@ -7,7 +7,6 @@
 from brainpy import tools
 from brainpy.errors import ConnectorError
 from .base import *
-from .utils import *
 
 __all__ = [
   'MatConn',
@@ -34,11 +33,9 @@ def __call__(self, pre_size, post_size):
     assert self.post_num == tools.size2num(post_size)
     return self
 
-  def build_mat(self, pre_size=None, post_size=None):
-    pre_num = get_pre_num(self, pre_size)
-    post_num = get_post_num(self, post_size)
-    assert self.conn_mat.shape[0] == pre_num
-    assert self.conn_mat.shape[1] == post_num
+  def build_mat(self):
+    assert self.conn_mat.shape[0] == self.pre_num
+    assert self.conn_mat.shape[1] == self.post_num
     return self.conn_mat
 
 
@@ -68,14 +65,12 @@ def __call__(self, pre_size, post_size):
                            f'the maximum id ({self.max_post}) of self.post_ids.')
     return self
 
-  def build_coo(self, pre_size=None, post_size=None):
-    pre_num = get_pre_num(self, pre_size)
-    post_num = get_post_num(self, post_size)
-    if pre_num <= self.max_pre:
-      raise ConnectorError(f'pre_num ({pre_num}) should be greater than '
+  def build_coo(self):
+    if self.pre_num <= self.max_pre:
+      raise ConnectorError(f'pre_num ({self.pre_num}) should be greater than '
                            f'the maximum id ({self.max_pre}) of self.pre_ids.')
-    if post_num <= self.max_post:
-      raise ConnectorError(f'post_num ({post_num}) should be greater than '
+    if self.post_num <= self.max_post:
+      raise ConnectorError(f'post_num ({self.post_num}) should be greater than '
                            f'the maximum id ({self.max_post}) of self.post_ids.')
     return self.pre_ids, self.post_ids
 
@@ -91,16 +86,12 @@ def __init__(self, indices, inptr):
     self.pre_num = self.inptr.size - 1
     self.max_post = bm.max(self.indices)
 
-  def build_csr(self, pre_size=None, post_size=None):
-    pre_size = get_pre_size(self, pre_size)
-    post_size = get_post_size(self, post_size)
-    pre_num = np.prod(pre_size)
-    post_num = np.prod(post_size)
-    if pre_num != self.pre_num:
+  def build_csr(self):
+    if self.pre_num != self.pre_num:
       raise ConnectorError(f'(pre_size, post_size) is inconsistent with '
                            f'the shape of the sparse matrix.')
-    if post_num <= self.max_post:
-      raise ConnectorError(f'post_num ({post_num}) should be greater than '
+    if self.post_num <= self.max_post:
+      raise ConnectorError(f'post_num ({self.post_num}) should be greater than '
                            f'the maximum id ({self.max_post}) of self.post_ids.')
     return self.indices, self.inptr