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port GenotypeGVCFs #15

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akiezun opened this issue Dec 10, 2014 · 4 comments
Closed

port GenotypeGVCFs #15

akiezun opened this issue Dec 10, 2014 · 4 comments
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@lbergelson
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PRIORITY_HIGH tools VariantWalker
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alpha-2

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@akiezun
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akiezun commented Dec 10, 2014

The requirement is to port the GenotypeGVCFs tool and tests. Test data should be made public whenever possible.
@akiezun akiezun added this to the Coelacanth milestone Dec 15, 2014
@akiezun akiezun assigned akiezun and unassigned akiezun Mar 12, 2015
@akiezun akiezun removed this from the Coelacanth milestone Apr 15, 2015
@akiezun akiezun changed the title GenotypeGVCFs as CLP port GenotypeGVCFs Apr 15, 2015
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akiezun commented Jun 22, 2015

closing in favor of broadinstitute/gatk-protected#42

@akiezun akiezun closed this as completed Jun 22, 2015
@droazen
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droazen commented Mar 28, 2016

alpha-2

@droazen droazen reopened this Mar 28, 2016
@droazen droazen added this to the alpha-2 milestone Mar 28, 2016
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droazen commented Mar 28, 2016

Depends on #1647 and #692

@akiezun akiezun mentioned this issue May 18, 2016
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Initial port of GenotypeGVCFs completed by broadinstitute/gatk-protected#553

lbergelson pushed a commit that referenced this issue May 31, 2017
@vruano @LeeTL1220
Added tool to create the Panel of Normals:
aaf170b 
  - CreatePanelOfNormals

Addresses issues #18 #17 #16 #15 and #7.

Test code for the new feature. Please squash before merging.

Added R script use to generete in input Pcovs for testing

Fixed some issues arising from merge.

Updated input test files to match what comes from ExomeReadCounts.
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