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Add conversion for fiber photometry data from Elena He #21

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merged 9 commits into from
Jul 30, 2024

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weiglszonja
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Fiber photometry from Elena He:

  • ongoing data collection
  • using abf format: Axon Binary Format
  • channels = ['520sig', 'fxn_gen', 'opto_TTL', 'camera', 'treadmill']
  • Add '520sig' is the fluorescence traces (voltage) for the green fiber AND 'treadmill' which is the velocity from the treadmill (voltage)
  • The other channels 'fxn_gen' is probably the excitation source 470 and 405 similar to the other experiment, we have the TTL pulses for the optogenetic stimulus and the camera (adding in a follow-up PR as TTL sources)

@weiglszonja weiglszonja marked this pull request as draft May 21, 2024 12:52
@weiglszonja weiglszonja self-assigned this May 22, 2024
@weiglszonja weiglszonja marked this pull request as ready for review July 19, 2024 10:24
This was referenced Jul 19, 2024
@weiglszonja
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Example file:
#39 (comment)

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@alessandratrapani alessandratrapani left a comment

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LGTM!

@weiglszonja weiglszonja merged commit cb63372 into main Jul 30, 2024
@weiglszonja weiglszonja deleted the add_new_fiber_photometry branch July 30, 2024 12:21
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2 participants