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cliburncliburn
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Fix bugs in native code notebook
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-350
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7 files changed

+427
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‎Package installation.ipynb‎

Lines changed: 42 additions & 99 deletions
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@@ -1,7 +1,7 @@
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{
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"metadata": {
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"name": "",
4-
"signature": "sha256:b4a14e5a79a217a0d6dcad516179224edfddda6577958a54e8117a5e9abd2c3c"
4+
"signature": "sha256:2c1a62222a5c8a939d4cc921a1d3494208360eeb9d477853850d16b382adf627"
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},
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"nbformat": 3,
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"nbformat_minor": 0,
@@ -12,221 +12,201 @@
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"cell_type": "code",
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"collapsed": false,
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"input": [
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"! conda install basemap &> /dev/null"
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"! conda install basemap "
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],
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"language": "python",
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"metadata": {},
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"outputs": [],
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"prompt_number": 29
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"outputs": []
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},
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{
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"cell_type": "code",
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"collapsed": false,
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"input": [
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"! pip install git+https://github.com/dabeaz/bitey.git &> /dev/null"
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"! pip install git+https://github.com/dabeaz/bitey.git"
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],
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"language": "python",
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"metadata": {},
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"outputs": [],
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"prompt_number": 13
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"outputs": []
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},
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{
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"cell_type": "code",
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"collapsed": false,
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"input": [
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"! pip install psutil &> /dev/null"
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"! pip install psutil"
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],
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"language": "python",
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"metadata": {},
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"outputs": [],
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"prompt_number": 9
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"outputs": []
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},
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{
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"cell_type": "code",
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"collapsed": false,
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"input": [
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"! pip install memory_profiler &> /dev/null"
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"! pip install memory_profiler"
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],
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"language": "python",
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"metadata": {},
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"outputs": [],
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"prompt_number": 11
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"outputs": []
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},
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{
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"cell_type": "code",
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"collapsed": false,
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"input": [
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"! pip install --pre line-profiler &> /dev/null"
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"! pip install --pre line-profiler "
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],
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"language": "python",
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"metadata": {},
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"outputs": [],
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"prompt_number": 7
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"outputs": []
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},
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{
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"cell_type": "code",
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"collapsed": false,
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"input": [
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"! pip install -I openpyxl==1.8.6 &> /dev/null"
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"! pip install -I openpyxl==1.8.6 "
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],
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"language": "python",
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"metadata": {},
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"outputs": [],
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"prompt_number": 5
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"outputs": []
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},
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{
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"cell_type": "code",
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"collapsed": false,
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"input": [
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"! pip install git+https://github.com/jakevdp/JSAnimation.git &> /dev/null"
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"! pip install git+https://github.com/jakevdp/JSAnimation.git"
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],
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"language": "python",
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"metadata": {},
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"outputs": [],
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"prompt_number": 3
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"outputs": []
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},
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{
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"cell_type": "code",
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"collapsed": false,
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"input": [
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"! pip install oct2py &> /dev/null"
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"! pip install oct2py "
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],
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"language": "python",
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"metadata": {},
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"outputs": [],
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"prompt_number": 40
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"outputs": []
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},
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{
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"cell_type": "code",
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"collapsed": false,
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"input": [
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"! pip install rpy2 &> /dev/null"
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"! pip install rpy2 "
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],
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"language": "python",
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"metadata": {},
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"outputs": [],
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"prompt_number": 38
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"outputs": []
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},
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{
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"cell_type": "code",
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"collapsed": false,
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"input": [
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"! pip install functional &> /dev/null"
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"! pip install functional "
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],
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"language": "python",
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"metadata": {},
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"outputs": [],
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"prompt_number": 21
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"outputs": []
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},
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{
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"cell_type": "code",
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"collapsed": false,
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"input": [
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"! pip install mpld3 &> /dev/null"
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"! pip install mpld3 "
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],
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"language": "python",
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"metadata": {},
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"outputs": [],
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"prompt_number": 24
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"outputs": []
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},
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{
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"cell_type": "code",
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"collapsed": false,
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"input": [
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"! pip install statsmodels &> /dev/null"
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"! pip install statsmodels"
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],
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"language": "python",
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"metadata": {},
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"outputs": [],
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"prompt_number": 23
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"outputs": []
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},
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{
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"cell_type": "code",
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"collapsed": false,
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"input": [
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"! pip install seaborn &> /dev/null"
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"! pip install seaborn "
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],
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"language": "python",
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"metadata": {},
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"outputs": [],
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"prompt_number": 22
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"outputs": []
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},
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{
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"cell_type": "code",
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"collapsed": false,
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"input": [
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"! pip install git+https://github.com/epmoyer/ipy_table &> /dev/null"
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"! pip install git+https://github.com/epmoyer/ipy_table "
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],
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"language": "python",
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"metadata": {},
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"outputs": [],
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"prompt_number": 33
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"outputs": []
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},
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{
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"cell_type": "code",
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"collapsed": false,
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"input": [
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" ! pip install git+https://github.com/arokem/python-matlab-bridge.git &> /dev/null"
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" ! pip install git+https://github.com/arokem/python-matlab-bridge.git "
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],
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"language": "python",
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"metadata": {},
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"outputs": [],
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"prompt_number": 25
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"outputs": []
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},
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{
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"cell_type": "code",
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"collapsed": false,
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"input": [
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"! pip install git+https://github.com/pymc-devs/pymc &> /dev/null"
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"! pip install git+https://github.com/pymc-devs/pymc"
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],
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"language": "python",
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"metadata": {},
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"outputs": [],
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"prompt_number": 26
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"outputs": []
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},
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{
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"cell_type": "code",
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"collapsed": false,
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"input": [
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"! pip install pyzmq &> /dev/null"
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"! pip install pyzmq "
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],
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"language": "python",
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"metadata": {},
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"outputs": [],
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"prompt_number": 30
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"outputs": []
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},
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{
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"cell_type": "code",
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"collapsed": false,
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"input": [
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"! pip install emcee &> /dev/null"
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"! pip install emcee "
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],
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"language": "python",
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"metadata": {},
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"outputs": [],
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"prompt_number": 31
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"outputs": []
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},
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{
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"cell_type": "code",
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"collapsed": false,
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"input": [
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"! pip install pystan &> /dev/null"
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"! pip install pystan "
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],
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"language": "python",
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"metadata": {},
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"outputs": [],
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"prompt_number": 19
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"outputs": []
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},
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{
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"cell_type": "code",
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"collapsed": false,
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"input": [
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"! pip install runipy &> /dev/null"
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"! pip install runipy"
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],
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"language": "python",
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"metadata": {},
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"outputs": [],
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"prompt_number": 36
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"outputs": []
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},
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"cell_type": "code",
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],
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"language": "python",
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"metadata": {},
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"outputs": [
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{
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"output_type": "stream",
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"stream": "stdout",
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"text": [
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"Installed fortranmagic.py. To use it, type:\n",
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" %load_ext fortranmagic\n",
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"Installed biteymagic.py. To use it, type:"
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]
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},
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{
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"output_type": "stream",
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"stream": "stdout",
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"text": [
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"\n",
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" %load_ext biteymagic\n",
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"Installed sqlitemagic.py. To use it, type:"
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]
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},
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{
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"output_type": "stream",
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"stream": "stdout",
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"text": [
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"\n",
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" %load_ext sqlitemagic\n",
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"Installed version_information.py. To use it, type:"
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]
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},
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{
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"output_type": "stream",
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"stream": "stdout",
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"text": [
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"\n",
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" %load_ext version_information\n"
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]
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}
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],
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"prompt_number": 15
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"outputs": []
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},
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{
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"cell_type": "code",

‎lessons/Bayesian models.ipynb‎

Lines changed: 3 additions & 5 deletions
Original file line numberDiff line numberDiff line change
@@ -36,7 +36,9 @@
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"cell_type": "code",
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"collapsed": false,
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"input": [
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"%matplotlib inline"
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"%matplotlib inline\n",
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"import matplotlib.pyplot as plt\n",
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"import numpy as np"
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],
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"language": "python",
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"metadata": {},
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"cell_type": "code",
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"collapsed": false,
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"input": [
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"import numpy as np\n",
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"from numba import jit\n",
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"import matplotlib.pyplot as plt\n",
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"from matplotlib import animation\n",
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"import pandas as pd\n",
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"import statsmodels.api as sm\n",
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"warnings.filterwarnings(\"ignore\")\n",
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"\n",
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"# define invlogit function\n",
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"@jit\n",
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"def invlogit(x):\n",
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" return pm.exp(x) / (1 + pm.exp(x))"
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],

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