Hello Team,
I am trying to run CHEUI for my RNA modification data but I am stuck in the following step:
/CHEUI/scripts/CHEUI_predict_model2.py -i read_level_m6A_predictions_sorted.txt -m /home/CHEUI/CHEUI_trained_models/CHEUI_m6A_model2.h5 -o site_level_m6A_predictions.txt
The command runs for unusually long times (20+ hours) and then gets idle without any error or sometimes abruptly gets killed. My input file size of "read_level_m6A_predictions_sorted.txt" is 3.38 GB. The output of ite_level_m6A_predictions.txt generated an output file of 10.782 MB before getting killed in the last run I attempted.
I don't know why that is happening. I ran the same script with m5C modifications successfully, where the read_level input file size was ~954 MB, which generated a site_level_output of 3.5 MB. I don't know what has possibly gone wrong with the m6A site-level calling. Any help in this regard would be greatly appreciated.
Hello Team,
I am trying to run CHEUI for my RNA modification data but I am stuck in the following step:
/CHEUI/scripts/CHEUI_predict_model2.py -i read_level_m6A_predictions_sorted.txt -m /home/CHEUI/CHEUI_trained_models/CHEUI_m6A_model2.h5 -o site_level_m6A_predictions.txt
The command runs for unusually long times (20+ hours) and then gets idle without any error or sometimes abruptly gets killed. My input file size of "read_level_m6A_predictions_sorted.txt" is 3.38 GB. The output of ite_level_m6A_predictions.txt generated an output file of 10.782 MB before getting killed in the last run I attempted.
I don't know why that is happening. I ran the same script with m5C modifications successfully, where the read_level input file size was ~954 MB, which generated a site_level_output of 3.5 MB. I don't know what has possibly gone wrong with the m6A site-level calling. Any help in this regard would be greatly appreciated.