[ENH] add gzip scripts for raw folder

[marcobarilari]

Very simple scripts to gzip any .nii file a raw folder. Any suggestion on how to make them smarter and how they are organize in the repo struct is welcome.

[codecov]

Codecov Report

Merging #179 (eefa8ae) into dev (caab30c) will increase coverage by 0.48%.
The diff coverage is 29.41%.

@@            Coverage Diff             @@
##              dev     #179      +/-   ##
==========================================
+ Coverage   44.66%   45.15%   +0.48%     
==========================================
  Files          94       96       +2     
  Lines        1679     1694      +15     
==========================================
+ Hits          750      765      +15     
  Misses        929      929              

Impacted Files	Coverage Δ
src/batches/setBatch3Dto4D.m	0.00% <ø> (ø)
src/batches/setBatchGZip.m	0.00% <0.00%> (ø)
src/workflows/bidsGZipRawFolder.m	0.00% <0.00%> (ø)
src/defaults/checkOptionsSource.m	100.00% <100.00%> (+100.00%)	⬆️

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[Remi-Gau]

Almost there. 🚀

Just realized that an easier function to write a test for is the checkOptionsSource.m .

You can clearly inspire yourself from the one written for checkOptions. 😉

[marcobarilari]

add a test for checkOptionSource

run on my computer and it saved ~500MB on a 3GB dataset so, around the ~15% of space saved. I do not know though if it is a linear equation.

LMK

[Remi-Gau]

add a test for checkOptionSource

And it passes and all !!! :-)

Could you run it locally with MOxUnit ? I suspect we will need some doc about that too.

run on my computer and it saved ~500MB on a 3GB dataset so, around the ~15% of space saved. I do not know though if it is a linear equation.

I doubt it is linear. It very much depends on what you are zipping.

[Remi-Gau]

We are good to go!

Press the big green button when you want.

[marcobarilari]

Could you run it locally with MOxUnit ? I suspect we will need some doc about that too.

You mean the script runTests? It does not work because I think I have to set the MOxUnit on my computer and I haven't done it yet. But yes +1 for adding docs about that

[Remi-Gau]

Actually to run all the tests you "simply" need to be in the tests folder and run moxunit_runtests.

But it does require you to install MOxUnit. Easier than it sounds. :-)

[Remi-Gau]

@all-contributors please add @marcobarilari for test

[allcontributors]

@Remi-Gau

This project's configuration file has malformed JSON: .all-contributorsrc. Error:: Unexpected token : in JSON at position 412

[Remi-Gau]

let's try again

@all-contributors please add @marcobarilari for test

[allcontributors]

@Remi-Gau

I've put up a pull request to add @marcobarilari! 🎉