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2 changes: 1 addition & 1 deletion demos/openneuro/ds000001_getOption.m
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
% (C) Copyright 2020 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2020 CPP BIDS SPM-pipeline developers

function opt = ds000001_getOption()
% returns a structure that contains the options chosen by the user to run
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2 changes: 1 addition & 1 deletion demos/openneuro/ds000001_run.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2020 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2020 CPP BIDS SPM-pipeline developers

% runDs00014

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2 changes: 1 addition & 1 deletion demos/openneuro/ds000114_getOption.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2020 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2020 CPP BIDS SPM-pipeline developers

function opt = ds000114_getOption()
% returns a structure that contains the options chosen by the user to run
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2 changes: 1 addition & 1 deletion demos/openneuro/ds000114_run.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2020 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2020 CPP BIDS SPM-pipeline developers

% runDs00014

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2 changes: 1 addition & 1 deletion demos/openneuro/ds001168_getOption.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2020 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2020 CPP BIDS SPM-pipeline developers

function opt = ds001168_getOption()
% returns a structure that contains the options chosen by the user to run
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2 changes: 1 addition & 1 deletion demos/openneuro/ds001168_run.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2020 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2020 CPP BIDS SPM-pipeline developers

% runDs001168

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2 changes: 1 addition & 1 deletion demos/vismotion/batch.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2019 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2019 CPP BIDS SPM-pipeline developers

clear;
clc;
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2 changes: 1 addition & 1 deletion demos/vismotion/getOption.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2019 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2019 CPP BIDS SPM-pipeline developers

function opt = getOption()
% opt = getOption()
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2 changes: 1 addition & 1 deletion miss_hit.cfg
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Expand Up @@ -8,7 +8,7 @@ copyright_entity: "Agah Karakuzu"
copyright_entity: "Olivier Collignon"
copyright_entity: "Mohamed Rezk"
copyright_entity: "Remi Gau"
copyright_entity: "CPP BIDS SPM-pipeline developpers"
copyright_entity: "CPP BIDS SPM-pipeline developers"

tab_width: 2

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2 changes: 1 addition & 1 deletion src/QA/anatomicalQA.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2020 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2020 CPP BIDS SPM-pipeline developers

function anatomicalQA(opt)
% anatomicalQA(opt)
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2 changes: 1 addition & 1 deletion src/QA/functionalQA.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2020 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2020 CPP BIDS SPM-pipeline developers

function functionalQA(opt)
% functionalQA(opt)
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2 changes: 1 addition & 1 deletion src/batches/setBatchComputeVDM.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2020 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2020 CPP BIDS SPM-pipeline developers

function matlabbatch = setBatchComputeVDM(matlabbatch, fmapType, refImage)
% matlabbatch = setBatchComputeVDM(type)
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2 changes: 1 addition & 1 deletion src/batches/setBatchCoregistration.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2020 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2020 CPP BIDS SPM-pipeline developers

function matlabbatch = setBatchCoregistration(matlabbatch, ref, src, other)
% matlabbatch = setBatchCoregistrationGeneral(matlabbatch, ref, src, other)
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2 changes: 1 addition & 1 deletion src/batches/setBatchCoregistrationFmap.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2020 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2020 CPP BIDS SPM-pipeline developers

function matlabbatch = setBatchCoregistrationFmap(BIDS, opt, subID)

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2 changes: 1 addition & 1 deletion src/batches/setBatchCoregistrationFuncToAnat.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2019 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2019 CPP BIDS SPM-pipeline developers

function matlabbatch = setBatchCoregistrationFuncToAnat(matlabbatch, BIDS, subID, opt)

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2 changes: 1 addition & 1 deletion src/batches/setBatchCreateVDMs.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2020 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2020 CPP BIDS SPM-pipeline developers

function matlabbatch = setBatchCreateVDMs(BIDS, opt, subID)
%
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2 changes: 1 addition & 1 deletion src/batches/setBatchFactorialDesign.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2019 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2019 CPP BIDS SPM-pipeline developers

function matlabbatch = setBatchFactorialDesign(grpLvlCon, group, conFWHM, rfxDir)

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2 changes: 1 addition & 1 deletion src/batches/setBatchImageCalculation.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2020 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2020 CPP BIDS SPM-pipeline developers

function matlabbatch = setBatchImageCalculation(matlabbatch, input, output, outDir, expression)

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2 changes: 1 addition & 1 deletion src/batches/setBatchMeanAnatAndMask.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2019 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2019 CPP BIDS SPM-pipeline developers

function matlabbatch = setBatchMeanAnatAndMask(opt, funcFWHM, rfxDir)

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2 changes: 1 addition & 1 deletion src/batches/setBatchNormalizationSpatialPrepro.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2019 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2019 CPP BIDS SPM-pipeline developers

function matlabbatch = setBatchNormalizationSpatialPrepro(matlabbatch, voxDim, opt)

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2 changes: 1 addition & 1 deletion src/batches/setBatchNormalize.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2019 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2019 CPP BIDS SPM-pipeline developers

function matlabbatch = setBatchNormalize(matlabbatch, deformField, voxDim, imgToResample)

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2 changes: 1 addition & 1 deletion src/batches/setBatchRealign.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2020 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2020 CPP BIDS SPM-pipeline developers

function [matlabbatch, voxDim] = setBatchRealign(varargin)
%
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2 changes: 1 addition & 1 deletion src/batches/setBatchReslice.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2020 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2020 CPP BIDS SPM-pipeline developers

function matlabbatch = setBatchReslice(referenceImg, sourceImages)
% matlabbatch = bidsSmoothing(referenceImg, sourceImages)
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2 changes: 1 addition & 1 deletion src/batches/setBatchSTC.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2019 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2019 CPP BIDS SPM-pipeline developers

function matlabbatch = setBatchSTC(BIDS, opt, subID)
% matlabbatch = setBatchSTC(BIDS, opt, subID)
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2 changes: 1 addition & 1 deletion src/batches/setBatchSaveCoregistrationMatrix.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2020 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2020 CPP BIDS SPM-pipeline developers

function matlabbatch = setBatchSaveCoregistrationMatrix(matlabbatch, BIDS, subID, opt)

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2 changes: 1 addition & 1 deletion src/batches/setBatchSegmentation.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2019 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2019 CPP BIDS SPM-pipeline developers

function matlabbatch = setBatchSegmentation(matlabbatch, opt)

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2 changes: 1 addition & 1 deletion src/batches/setBatchSelectAnat.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2019 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2019 CPP BIDS SPM-pipeline developers

function matlabbatch = setBatchSelectAnat(matlabbatch, BIDS, opt, subID)
% matlabbatch = setBatchSelectAnat(matlabbatch, BIDS, opt, subID)
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2 changes: 1 addition & 1 deletion src/batches/setBatchSkullStripping.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2020 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2020 CPP BIDS SPM-pipeline developers

function matlabbatch = setBatchSkullStripping(matlabbatch, BIDS, subID, opt)
%
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2 changes: 1 addition & 1 deletion src/batches/setBatchSmoothConImages.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2019 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2019 CPP BIDS SPM-pipeline developers

function matlabbatch = setBatchSmoothConImages(group, funcFWHM, conFWHM, opt)

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2 changes: 1 addition & 1 deletion src/batches/setBatchSmoothing.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2019 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2019 CPP BIDS SPM-pipeline developers

function matlabbatch = setBatchSmoothing(BIDS, opt, subID, funcFWHM)

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2 changes: 1 addition & 1 deletion src/batches/setBatchSubjectLevelContrasts.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2019 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2019 CPP BIDS SPM-pipeline developers

function matlabbatch = setBatchSubjectLevelContrasts(opt, subID, funcFWHM)

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2 changes: 1 addition & 1 deletion src/batches/setBatchSubjectLevelGLMSpec.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2019 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2019 CPP BIDS SPM-pipeline developers

function matlabbatch = setBatchSubjectLevelGLMSpec(varargin)

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2 changes: 1 addition & 1 deletion src/defaults/checkOptions.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2019 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2019 CPP BIDS SPM-pipeline developers

function opt = checkOptions(opt)
% opt = checkOptions(opt)
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2 changes: 1 addition & 1 deletion src/defaults/spm_my_defaults.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2019 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2019 CPP BIDS SPM-pipeline developers

function spm_my_defaults
% This is where we set the defautls we want to use.
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2 changes: 1 addition & 1 deletion src/fieldmaps/getBlipDirection.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2020 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2020 CPP BIDS SPM-pipeline developers

function blipDir = getBlipDirection(metadata)
%
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2 changes: 1 addition & 1 deletion src/fieldmaps/getMetadataFromIntendedForFunc.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2020 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2020 CPP BIDS SPM-pipeline developers

function [totalReadoutTime, blipDir] = getMetadataFromIntendedForFunc(BIDS, fmapMetadata)
% get metadata of the associated bold file
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2 changes: 1 addition & 1 deletion src/fieldmaps/getTotalReadoutTime.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2020 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2020 CPP BIDS SPM-pipeline developers

function totalReadoutTime = getTotalReadoutTime(metadata)
%
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2 changes: 1 addition & 1 deletion src/fieldmaps/getVdmFile.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2020 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2020 CPP BIDS SPM-pipeline developers

function vdmFile = getVdmFile(BIDS, opt, boldFilename)
%
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2 changes: 1 addition & 1 deletion src/getAnatFilename.m
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
% (C) Copyright 2020 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2020 CPP BIDS SPM-pipeline developers

function [anatImage, anatDataDir] = getAnatFilename(BIDS, subID, opt)
% [anatImage, anatDataDir] = getAnatFilename(BIDS, subID, opt)
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2 changes: 1 addition & 1 deletion src/getBoldFilename.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2020 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2020 CPP BIDS SPM-pipeline developers

function [boldFileName, subFuncDataDir] = getBoldFilename(varargin)
% [fileName, subFuncDataDir] = getBoldFilename(BIDS, opt, subID, sessionID, runID)
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2 changes: 1 addition & 1 deletion src/getData.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2020 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2020 CPP BIDS SPM-pipeline developers

function [group, opt, BIDS] = getData(opt, BIDSdir, type)
% [group, opt, BIDS] = getData(opt, BIDSdir, type)
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2 changes: 1 addition & 1 deletion src/getFuncVoxelDims.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2020 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2020 CPP BIDS SPM-pipeline developers

function [voxDim, opt] = getFuncVoxelDims(opt, subFuncDataDir, prefix, fileName)
% [voxDim, opt] = getFuncVoxelDims(opt, subFuncDataDir, prefix, fileName)
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2 changes: 1 addition & 1 deletion src/getInfo.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2020 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2020 CPP BIDS SPM-pipeline developers

function varargout = getInfo(BIDS, subID, opt, info, varargin)
% wrapper function to fetch specific info in a BIDS structure returned by
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2 changes: 1 addition & 1 deletion src/getMeanFuncFilename.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2020 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2020 CPP BIDS SPM-pipeline developers

function [meanImage, meanFuncDir] = getMeanFuncFilename(BIDS, subID, opt)
% [anatImage, anatDataDir] = getAnatFilename(BIDS, subID, opt)
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2 changes: 1 addition & 1 deletion src/getPrefix.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2020 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2020 CPP BIDS SPM-pipeline developers

function [prefix, motionRegressorPrefix] = getPrefix(step, opt, funcFWHM)
% [prefix, motionRegressorPrefix] = getPrefix(step, opt, funcFWHM)
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2 changes: 1 addition & 1 deletion src/getRealignParamFile.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2020 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2020 CPP BIDS SPM-pipeline developers

function realignParamFile = getRealignParamFile(fullpathBoldFileName, prefix)

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2 changes: 1 addition & 1 deletion src/getSliceOrder.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2020 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2020 CPP BIDS SPM-pipeline developers

function sliceOrder = getSliceOrder(opt, verbose)
% get the slice order information from the BIDS data set or from getOption
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2 changes: 1 addition & 1 deletion src/getSpecificSubjects.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2020 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2020 CPP BIDS SPM-pipeline developers

function group = getSpecificSubjects(opt, group, iGroup, subjects)

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2 changes: 1 addition & 1 deletion src/group_level/getGrpLevelContrastToCompute.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2019 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2019 CPP BIDS SPM-pipeline developers

function [grpLvlCon, iStep] = getGrpLevelContrastToCompute(opt)

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2 changes: 1 addition & 1 deletion src/group_level/getRFXdir.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2019 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2019 CPP BIDS SPM-pipeline developers

function rfxDir = getRFXdir(opt, funcFWHM, conFWHM, contrastName)
% rfxDir = getRFXdir(opt, funcFWHM, conFWHM, iStep, iCon)
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2 changes: 1 addition & 1 deletion src/mancoreg/mancoreg.m
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@@ -1,7 +1,7 @@
% (C) Copyright 2004-2009 JH
% (C) Copyright 2009_2012 DSS
% (C) Copyright 2012_2019 Remi Gau
% (C) Copyright 2020 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2020 CPP BIDS SPM-pipeline developers

function mancoreg(targetimage, sourceimage)
% mancoreg(targetimage, sourceimage)
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2 changes: 1 addition & 1 deletion src/mancoreg/mancoregCallbacks.m
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@@ -1,7 +1,7 @@
% (C) Copyright 2004-2009 JH
% (C) Copyright 2009_2012 DSS
% (C) Copyright 2012_2019 Remi Gau
% (C) Copyright 2020 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2020 CPP BIDS SPM-pipeline developers

function mancoregCallbacks(operation, varargin)
% mancoreg_callbacks(op, varargin)
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2 changes: 1 addition & 1 deletion src/reports/copyGraphWindownOutput.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2019 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2019 CPP BIDS SPM-pipeline developers

function imgNb = copyGraphWindownOutput(opt, subID, action, imgNb)
%
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2 changes: 1 addition & 1 deletion src/reports/reportBIDS.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2020 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2020 CPP BIDS SPM-pipeline developers

function reportBIDS(opt)

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2 changes: 1 addition & 1 deletion src/setDerivativesDir.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2020 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2020 CPP BIDS SPM-pipeline developers

function opt = setDerivativesDir(opt)
% derivativeDir sets the derivatives folder
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2 changes: 1 addition & 1 deletion src/subject_level/concatBetaImgTmaps.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2019 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2019 CPP BIDS SPM-pipeline developers

function concatBetaImgTmaps(funcFWHM, opt, deleteIndBeta, deleteIndTmaps)
% Make 4D images of beta and t-maps for the MVPA. ::
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2 changes: 1 addition & 1 deletion src/subject_level/convertOnsetTsvToMat.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2019 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2019 CPP BIDS SPM-pipeline developers

function fullpathOnsetFileName = convertOnsetTsvToMat(opt, tsvFile)
%% Converts a tsv file to an onset file suitable for SPM ffx analysis
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2 changes: 1 addition & 1 deletion src/subject_level/createAndReturnOnsetFile.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2019 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2019 CPP BIDS SPM-pipeline developers

function onsetFileName = createAndReturnOnsetFile(opt, subID, tsvFile, funcFWHM)
% onsetFileName = createAndReturnOnsetFile(opt, boldFileName, prefix, isMVPA)
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2 changes: 1 addition & 1 deletion src/subject_level/deleteResidualImages.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2020 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2020 CPP BIDS SPM-pipeline developers

function deleteResidualImages(ffxDir)
delete(fullfile(ffxDir, 'Res_*.nii'));
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2 changes: 1 addition & 1 deletion src/subject_level/getBoldFilenameForFFX.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2020 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2020 CPP BIDS SPM-pipeline developers

function [boldFileName, prefix] = getBoldFilenameForFFX(varargin)
% [boldFileName, prefix] = getBoldFilenameForFFX(BIDS, opt, subID, funcFWHM, iSes, iRun)
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2 changes: 1 addition & 1 deletion src/subject_level/getFFXdir.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2019 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2019 CPP BIDS SPM-pipeline developers

function ffxDir = getFFXdir(subID, funcFWFM, opt)
% ffxDir = getFFXdir(subID, funcFWFM, opt)
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2 changes: 1 addition & 1 deletion src/subject_level/specifyContrasts.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2019 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2019 CPP BIDS SPM-pipeline developers

function contrasts = specifyContrasts(ffxDir, taskName, opt)
% Specifies the first level contrasts
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2 changes: 1 addition & 1 deletion src/templates/templateFunction.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2020 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2020 CPP BIDS SPM-pipeline developers

function [argout1, argout2] = templateFunction(argin1, argin2, argin3)
%
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2 changes: 1 addition & 1 deletion src/templates/templateFunctionExample.m
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% (C) Copyright 2020 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2020 CPP BIDS SPM-pipeline developers

function templateFunctionExample()
% This function illustrates a documentation test defined for MOdox.
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2 changes: 1 addition & 1 deletion src/templates/templateFunctionNumpy.m
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@@ -1,4 +1,4 @@
% (C) Copyright 2020 CPP BIDS SPM-pipeline developpers
% (C) Copyright 2020 CPP BIDS SPM-pipeline developers

function [argout] = templateFunctionNumpy(argin1, argin2, argin3)
%
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