[INFRA] updates for 1.0.0 release

.all-contributorsrc

@@ -88,6 +88,16 @@
         "code",
         "review"
       ]
+    },
+    {
+      "login": "mwmaclean",
+      "name": "Michèle MacLean",
+      "avatar_url": "https://avatars.githubusercontent.com/u/54547865?v=4",
+      "profile": "https://github.com/mwmaclean",
+      "contributions": [
+        "code",
+        "ideas"
+      ]
     }
   ],
   "contributorsPerLine": 7,

.github/workflows/miss_hit.yml → .github/workflows/miss_hit_quality.yml

@@ -1,4 +1,4 @@
-name: miss_hit
+name: miss_hit_quality
 
 on:
   push:
@@ -29,10 +29,6 @@ jobs:
         python -m pip install --upgrade pip setuptools
         pip3 install -r requirements.txt
 
-    - name: MISS_HIT Code style
-      run: |
-        mh_style --process-slx
-
     - name: MISS_HIT Metrics
       run: |
         mh_metric --ci

.github/workflows/miss_hit_style.yml

@@ -0,0 +1,35 @@
+name: miss_hit_style
+
+on:
+  push:
+    branches:
+      - master
+  pull_request:
+    branches: '*'
+
+jobs:
+  build:
+
+    runs-on: ubuntu-latest
+
+    steps:
+
+    - uses: actions/checkout@v2
+      with:
+        submodules: true
+        fetch-depth: 1
+
+    - name: Set up Python 3.6
+      uses: actions/setup-python@v2
+      with:
+        python-version: 3.6
+
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip setuptools
+        pip3 install -r requirements.txt
+
+    - name: MISS_HIT Code style
+      run: |
+        mh_style
+

.github/workflows/run_system_tests.yml

@@ -56,20 +56,9 @@ jobs:
          make -C spm12/src PLATFORM=octave install
          octave $OCTFLAGS --eval "addpath(fullfile(pwd, 'spm12')); savepath();"
 
-    - name: Update octave path
-      run: |
-        octave $OCTFLAGS --eval "initCppSpm; savepath();"       
-
-    - name: Prepare data
-      run: |
-        inputs_folder='demos/MoAE/inputs/'
-        mkdir $inputs_folder
-        curl http://www.fil.ion.ucl.ac.uk/spm/download/data/MoAEpilot/MoAEpilot.bids.zip --output $inputs_folder'MoAEpilot.zip'
-        unzip $inputs_folder'MoAEpilot.zip' -d $inputs_folder
-        mv $inputs_folder/MoAEpilot $inputs_folder/raw
-
+
     - name: Run system tests
       run: |
-        cd demos/MoAE
-        octave $OCTFLAGS --eval "MoAEpilot_run"                  
+        cd manualTests/
+        octave $OCTFLAGS --eval "systemTestMoAE"                  
 

.github/workflows/run_tests.yml

@@ -78,7 +78,7 @@ jobs:
 
     - name: Run tests
       run: |
-        octave $OCTFLAGS --eval "runTests"
+        octave $OCTFLAGS --eval "run_tests"
         cat test_report.log | grep 0
         bash <(curl -s https://codecov.io/bash)         
 

.gitignore

@@ -29,6 +29,7 @@ docs/build/*
 
 # ignore virtual env
 cpp_spm/*
+env/*
 
 # visual studio code stuff
 .vscode