cpp-lln-lab · Remi-Gau · Sep 9, 2020 · Sep 8, 2020
diff --git a/README.md b/README.md
@@ -75,6 +75,31 @@ Any details of the experiment can be changed in `setParameters.m` (e.g., experim
 - Task(s)
   - Instructions
   - Task #1 parameters
+
+#### Let the scanner pace the experiment
+
+Set `cfg.pacedByTriggers.do` to `true` and you can then set all the details in this `if` block
+
+```matlab
+% Time is here in in terms of number repetition time (i.e MRI volumes)
+if cfg.pacedByTriggers.do
+
+  cfg.pacedByTriggers.quietMode = true;
+  cfg.pacedByTriggers.nbTriggers = 1;
+
+  cfg.timing.eventDuration = cfg.mri.repetitionTime / 2 - 0.04; % second
+
+  % Time between blocs in secs
+  cfg.timing.IBI = 0;
+  % Time between events in secs
+  cfg.timing.ISI = 0;
+  % Number of seconds before the motion stimuli are presented
+  cfg.timing.onsetDelay = 0;
+  % Number of seconds after the end all the stimuli before ending the run
+  cfg.timing.endDelay = 2;
+
+end
+```
 
 ### 3.3. <a name='subfunexpDesign'></a>subfun/expDesign
 
@@ -103,10 +128,4 @@ The `numEventsPerBlock` should be a multiple of the number of "base" listed in t
 - `expParameters.designSpeeds` is an array `(nr_blocks, numEventsPerBlock) * speedEvent`
 - `expParameters.designFixationTargets` is an array `(nr_blocks, numEventsPerBlock)` showing for each event if it should be accompanied by a target
 
-### 3.4. <a name='subfuneyeTracker'></a>subfun/eyeTracker
-
-Eyetracker script, still to be debugged. Will probably moved in the CPP_PTB package. It deals with the calibration (dufault or custom), eye movements recording and saving the files.
-
-### 3.5. <a name='subfunwait4Trigger'></a>subfun/wait4Trigger
 
-Simple functions that counts the triggers sent by the MRI computer to the stimulation computer to sync brain volume recordings and stimulation.
diff --git a/lib/CPP_BIDS b/lib/CPP_BIDS
diff --git a/lib/CPP_PTB b/lib/CPP_PTB
diff --git a/setParameters.m b/setParameters.m
@@ -66,7 +66,7 @@
     % Number of seconds after the end all the stimuli before ending the run
     cfg.timing.endDelay = 3.6;
 
-    % reexpress those in terms of repetition time
+    % reexpress those in terms of number repetition time
     if cfg.pacedByTriggers.do
 
         cfg.pacedByTriggers.quietMode = true;

diff --git a/version.txt b/version.txt
@@ -0,0 +1 @@
+v0.0.1
+0 −3		.gitignore
+17 −22		.travis.yml
+373 −57		README.md
+0 −3		binder/apt.txt
+0 −2		binder/environment.yml
+0 −3		binder/postBuild
+0 −144		docs/functions_description.md
+0 −97		docs/installation.md
+201 −223		lib/utils/file_utils.m
+0 −11		manualTests/dummyData/.bidsignore
+2 −9		manualTests/miss_hit.cfg
+3 −3		manualTests/test_createBoldJson.m
+22 −139		manualTests/test_makeRawDataset.m
+41 −0		manualTests/test_userInput.m
+1 −8		miss_hit.cfg
+0 −11		notebooks/README.md
+0 −795		notebooks/basic_usage.ipynb
+0 −646		notebooks/creating_BIDS_dataset.ipynb
+0 −288		notebooks/more_on_saving.ipynb
+12 −67		src/checkCFG.m
+1 −4		src/convertSourceToRaw.m
+37 −0		src/createBoldJson.m
+22 −26		src/createFilename.m
+0 −127		src/createJson.m
+16 −28		src/saveEventsFile.m
+0 −19		src/subfun/askForGroupAndOrSession.m
+0 −33		src/subfun/askUserCli.m
+0 −42		src/subfun/askUserGui.m
+0 −34		src/subfun/createQuestionList.m
+0 −10		src/subfun/getIsQuestionToAsk.m
+0 −14		src/subfun/isPositiveInteger.m
+45 −0		src/subfun/parseFunc.m
+0 −52		src/subfun/removeAllDateSuffix.m
+0 −1		src/subfun/returnHeaderName.m
+0 −25		src/subfun/setDefaultResponses.m
+0 −11		src/subfun/transferInfoToBids.m
+57 −14		src/userInputs.m
+1 −8		tests/miss_hit.cfg
+0 −52		tests/test_askForGroupAndOrSession.m
+9 −35		tests/test_checkCFG.m
+41 −0		tests/test_createBoldJson.m
+0 −0		tests/test_createDatasetDescription.m
+56 −173		tests/test_createFilename.m
+0 −140		tests/test_createJson.m
+0 −24		tests/test_createQuestionList.m
+0 −29		tests/test_getIsQuestionToAsk.m
+0 −17		tests/test_isPositiveInteger.m
+61 −185		tests/test_saveEventsFileSave.m
+0 −32		tests/test_setDefaultResponses.m
+0 −9		tests/test_transferInfoToBids.m