update README

README.md

@@ -13,14 +13,17 @@ For instructions see the following links:
 | [CPP_BIDS](https://github.com/cpp-lln-lab/CPP_BIDS)      | ?            |
 | [CPP_PTB](https://github.com/cpp-lln-lab/CPP_PTB)        | ?            |
 | [PsychToolBox](http://psychtoolbox.org/)                 | >=3.0.14     |
-| [Matlab](https://www.mathworks.com/products/matlab.html) | >=2017      |
+| [Matlab](https://www.mathworks.com/products/matlab.html) | >=2017       |
 | or [octave](https://www.gnu.org/software/octave/)        | >=4.?        |
 
 ## Installation
 
-git clone --recurse-submodules https://github.com/Remi-Gau/repo_with_submod.git
-cd repo_with_submod/
-git submodule update --remote
+The CPP_BIDS and CPP_PTB dependencies are already set up as submodule to this repository.
+You can install it all with git by doing. 
+
+```bash
+git clone --recurse-submodules https://github.com/cpp-lln-lab/localizer_visual_motion.git
+```
 
 ## Structure and function details
 

setParameters.m

@@ -55,8 +55,8 @@
     % Coherence Level (0-1)
     cfg.dot.coherence = 1;
     % nb dots per visual angle square.
-    cfg.dot.density = .25; 
-    
+    cfg.dot.density = .25;
+
     % Dot life time in seconds
     cfg.dot.lifeTime = 10;
 
@@ -70,7 +70,7 @@
     % Diameter/length of side of aperture in Visual angles
     cfg.aperture.type = 'circle';
     cfg.aperture.width = []; % if left empty it will take the screen height
-    cfg.aperture.xPos = -30;
+    cfg.aperture.xPos = 0;
 
     %% Task(s)
 
@@ -85,7 +85,7 @@
     cfg.fixation.color = cfg.color.white;
     cfg.fixation.width = 1;
     cfg.fixation.lineWidthPix = 2;
-    cfg.fixation.xDisplacement = 30;
+    cfg.fixation.xDisplacement = 0;
     cfg.fixation.yDisplacement = 0;
 
     cfg.target.maxNbPerBlock = 2;

subfun/doDotMo.m

@@ -13,66 +13,66 @@
     % The dots are drawn on a square with a width equals to the width of the
     % screen
     % We then draw an aperture on top to hide the certain dots.
-    
+
     %% Get parameters
-    
+
     dots = initializeDots(cfg, thisEvent);
-    
+
     % Set for how many frames this event will last
     framesLeft = floor(cfg.eventDuration / cfg.screen.ifi);
-    
+
     %% Start the dots presentation
     vbl = Screen('Flip', cfg.screen.win);
     onset = vbl;
-    
+
     while framesLeft
-        
+
         [dots] = updateDots(dots, cfg);
-        
+
         %% Center the dots
         % We assumed that zero is at the top left, but we want it to be
         %  in the center, so shift the dots up and left, which just means
         %  adding half of the screen width in pixel to both the x and y direction.
         thisEvent.dot.positions = (dots.positions - cfg.screen.winWidth / 2)';
-        
+
         %% make textures
         dotTexture('make', cfg, thisEvent);
-        
+
         apertureTexture('make', cfg, thisEvent);
-        
+
         %% draw evetything and flip screen
-        
+
         dotTexture('draw', cfg, thisEvent);
-        
+
         apertureTexture('draw', cfg, thisEvent);
-        
+
         % If this frame shows a target we change the color
         thisFixation.fixation = cfg.fixation;
         thisFixation.screen = cfg.screen;
         if thisEvent.target(1) && GetSecs < (onset + cfg.target.duration)
             thisFixation.fixation.color = cfg.fixation.colorTarget;
         end
         drawFixation(thisFixation);
-        
+
         Screen('DrawingFinished', cfg.screen.win);
-        
+
         vbl = Screen('Flip', cfg.screen.win, vbl + cfg.screen.ifi);
-        
+
         %% Update counters
-        
+
         % Check for end of loop
         framesLeft = framesLeft - 1;
-        
+
     end
-    
+
     %% Erase last dots
-    
+
     drawFixation(cfg);
-    
+
     Screen('DrawingFinished', cfg.screen.win);
-    
+
     vbl = Screen('Flip', cfg.screen.win, vbl + cfg.screen.ifi);
-    
+
     duration = vbl - onset;
-    
+
 end

subfun/expDesign.m

@@ -39,7 +39,7 @@
     % Set directions for static and motion condition
     motionDirections = [0 90 180 270];
     staticDirections = [0 90 180 270];
-%     staticDirections = [-1 -1 -1 -1];
+    %     staticDirections = [-1 -1 -1 -1];
 
     %% Check inputs
 

visualLocTanslational.m

@@ -36,12 +36,12 @@
     % Convert some values from degrees to pixels
     cfg.dot = degToPix('size', cfg.dot, cfg);
     cfg.dot = degToPix('speed', cfg.dot, cfg);
-    
+
     % Get dot speeds in pixels per frame
     cfg.dot.speedPixPerFrame = cfg.dot.speedPix / cfg.screen.monitorRefresh;
-    
+
     cfg.aperture = degToPix('xPos', cfg.aperture, cfg);
-    
+
     % dots are displayed on a square with a length in visual angle equal to the
     % field of view
     cfg.dot.number = round(cfg.dot.density * (cfg.screen.winWidth / cfg.screen.ppd)^2);
@@ -55,15 +55,15 @@
     % Prepare for the output logfiles with all
     logFile.extraColumns = cfg.extraColumns;
     logFile = saveEventsFile('open', cfg, logFile);
-    
+
     % prepare textures
     cfg = apertureTexture('init', cfg);
     cfg = dotTexture('init', cfg);
-    
+
     disp(cfg);
-    
+
     standByScreen(cfg);
-    
+
     % prepare the KbQueue to collect responses
     getResponse('init', cfg.keyboard.responseBox, cfg);
     getResponse('start', cfg.keyboard.responseBox);
@@ -148,7 +148,7 @@
     WaitSecs(cfg.endDelay);
 
     cfg = getExperimentEnd(cfg);
-    
+
     % Close the logfiles
     saveEventsFile('close', cfg, logFile);
 
@@ -166,7 +166,7 @@
     else
         save(matFile, '-v7.3');
     end
-    
+
     farewellScreen(cfg);
 
     cleanUp();