Conversation
Member
Author
|
@mcflugen Please let me know what you think! |
40 tasks
mcflugen
added a commit
that referenced
this pull request
Feb 16, 2022
* Update docs for API changes (#47) * Update long example for API changes * Move headings; add acknowledgment * Spell check * Update changelog * Fix minor formatting issues (#49) * Swallow empty line before sample import statement * Include docs/conf.py in list of files to format * Format with black * Update changelog * Add conda-forge badge * Preparing release 0.3.8 * Back to development: 0.3.9 * Complete API documentation (#55) * Help autodoc find babelizer package * Use sphinx-click to autodoc babelizer.cli It works wonderfully. See https://sphinx-click.readthedocs.io. * Remove unused Submodules and Module contents headings * Edit docstrings in babelizer.cli module I tried to make them look good at the CLI and in the docs. * Add docstrings to exception classes * Ensure autodoc sees docstring in ctr * Add docstrings to metadata module * The wrap module is no longer used * Add docstrings for render and utils modules * Make pretty with unforgiving black * Be sure to blacken conf.py * Remove single-page API docs * Switch to multi-page API docs * Tidying after building and reviewing docs * Update changelog * Update and clarify example (#54) * Add final directory structure image * Tweak summary in sample babelizer input file * Update example to use relative paths * docs: improve the readme documentation (#57) * add "is the babelizer for me?" section * Minor edits Co-authored-by: Mark Piper <mark.piper@colorado.edu> * tests: update tests and generate coverage (#56) * Generate coverage report * Include coverage package * Move language tests to a new directory * Move language tests next to language examples * Use a persistent tmpdir to test babelize update * Remove non-language tests * Add basic CLI tests * Make new rule for language tests * Generate coverage for tests * Suppress builds of internal PRs * add refs for CCA and grpc4bmi * add some initial text about similar previous works * tests: add Python 3.10 to ci tests, drop Python 3.8 (#65) * add Python 3.10 to ci tests * temporarily limit builds for debugging * temporarily only test on mac * temporarily build on only linux * add Python 3.10 back to tests * add python 3.8 to builds * require python >= 3.9; test on linux and mac * add a requirements file for development * remove unused requirements * a few more edits * reformat with new version of black * Text edits; moved Figure 1 closer to reference Hopefully moving the figure won't upset the page formatting. * Fix BibTeX typo * Move text before page break forced by Fig 2 * Fix citation formatting * Standardize formatting of tool names * Complete author list for Hut et al. Co-authored-by: Mark Piper <mark.piper@colorado.edu>
mcflugen
added a commit
that referenced
this pull request
Mar 4, 2022
* add paper.md for JOSS submission * update to almost a first draft * Add bibfile; cite Peckham, Hutton I want to check that these render correctly. * Editing pass (#38) * Add DOI for Peckham ref * Add ESMF and pymt refs * Editing pass 1 Still need to make figures. * Minor edits * add script to make language pie graph * add target to build joss paper * docs: add references and figures (#42) * Edit text * Add references for component modeling * Add sample babel.toml file for PRMSSurface * Fix typo * Add Syvitski to author list * Change citation style * Add ci section to sample babelizer config file * docs: update figures for JOSS submission (#45) * Add model repository languages figure * Add sample config as md, pdf, plus generator script * Add figure 1 and update figure 2 * Change figure format (#46) * Change figure format from SVG to PNG * Label and autoref figures * Text edit * Works locally, not in preview service * update title * Add text to paper describing similar work (#64) * Update docs for API changes (#47) * Update long example for API changes * Move headings; add acknowledgment * Spell check * Update changelog * Fix minor formatting issues (#49) * Swallow empty line before sample import statement * Include docs/conf.py in list of files to format * Format with black * Update changelog * Add conda-forge badge * Preparing release 0.3.8 * Back to development: 0.3.9 * Complete API documentation (#55) * Help autodoc find babelizer package * Use sphinx-click to autodoc babelizer.cli It works wonderfully. See https://sphinx-click.readthedocs.io. * Remove unused Submodules and Module contents headings * Edit docstrings in babelizer.cli module I tried to make them look good at the CLI and in the docs. * Add docstrings to exception classes * Ensure autodoc sees docstring in ctr * Add docstrings to metadata module * The wrap module is no longer used * Add docstrings for render and utils modules * Make pretty with unforgiving black * Be sure to blacken conf.py * Remove single-page API docs * Switch to multi-page API docs * Tidying after building and reviewing docs * Update changelog * Update and clarify example (#54) * Add final directory structure image * Tweak summary in sample babelizer input file * Update example to use relative paths * docs: improve the readme documentation (#57) * add "is the babelizer for me?" section * Minor edits Co-authored-by: Mark Piper <mark.piper@colorado.edu> * tests: update tests and generate coverage (#56) * Generate coverage report * Include coverage package * Move language tests to a new directory * Move language tests next to language examples * Use a persistent tmpdir to test babelize update * Remove non-language tests * Add basic CLI tests * Make new rule for language tests * Generate coverage for tests * Suppress builds of internal PRs * add refs for CCA and grpc4bmi * add some initial text about similar previous works * tests: add Python 3.10 to ci tests, drop Python 3.8 (#65) * add Python 3.10 to ci tests * temporarily limit builds for debugging * temporarily only test on mac * temporarily build on only linux * add Python 3.10 back to tests * add python 3.8 to builds * require python >= 3.9; test on linux and mac * add a requirements file for development * remove unused requirements * a few more edits * reformat with new version of black * Text edits; moved Figure 1 closer to reference Hopefully moving the figure won't upset the page formatting. * Fix BibTeX typo * Move text before page break forced by Fig 2 * Fix citation formatting * Standardize formatting of tool names * Complete author list for Hut et al. Co-authored-by: Mark Piper <mark.piper@colorado.edu> * Use Tucker et al. GMD article instead of preprint (#70) * remove extra comma Co-authored-by: Mark Piper <mark.piper@colorado.edu>
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
2 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
The goal of this PR is to update the unit tests for the babelizer and generate code coverage statistics.
One big, questionable, decision: I moved the language-specific tests under the external directory. My rationale is that these tests require the language examples to be built, which takes several extra steps. Only language-agnostic tests remain under the top-level tests directory. I made rules to handle both in the Makefile.
Summary of changes:
babelize updatetest with the Python exampleThis fixes #53.