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@cshenry cshenry commented Nov 4, 2025

Integrates a new method to average expression data across replicates for each strain. This method:

  • Takes replicate columns (e.g., ACN2586_1, ACN2586_2) and averages them into single columns per strain
  • Properly uses MSCondition class instead of a fake ExpressionCondition
  • Returns a new MSExpression object with averaged data
  • Handles cases where replicates exist, single columns exist, or no data is found
  • Includes comprehensive logging and error handling

This method is useful for preprocessing expression data before analysis.

Integrates a new method to average expression data across replicates for each strain. This method:
- Takes replicate columns (e.g., ACN2586_1, ACN2586_2) and averages them into single columns per strain
- Properly uses MSCondition class instead of a fake ExpressionCondition
- Returns a new MSExpression object with averaged data
- Handles cases where replicates exist, single columns exist, or no data is found
- Includes comprehensive logging and error handling

This method is useful for preprocessing expression data before analysis.
@cshenry cshenry merged commit 01f9e30 into main Nov 4, 2025
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3 participants