CD4-Cell-Evolution

Analyses for an initial paper on the evolutionary CD4+ T-cell PRO-seq datasets.

Name		Name	Last commit message	Last commit date
Latest commit History 490 Commits
Alignments_1stPrep		Alignments_1stPrep
Alignments_4thPrep		Alignments_4thPrep
AllData		AllData
GWAS		GWAS
KRABKD		KRABKD
alignment_scripts		alignment_scripts
annotations		annotations
annotations_mouse_rat		annotations_mouse_rat
dataSanityChecks		dataSanityChecks
differencesInInduction		differencesInInduction
dna_sequence		dna_sequence
enhancer		enhancer
gene_enhancer		gene_enhancer
induction_human		induction_human
lib		lib
makeRecipBest		makeRecipBest
metaPlots		metaPlots
pausing_changes		pausing_changes
response		response
rnaseq		rnaseq
stability		stability
tfbs		tfbs
tss_caller		tss_caller
tu_caller		tu_caller
Beagle4 Imputation		Beagle4 Imputation
GATK SNP call		GATK SNP call
Makefile		Makefile
README.md		README.md
intersect SNAP linkage block, SNPs and dREG sites		intersect SNAP linkage block, SNPs and dREG sites
linkage blocks by SNAP output		linkage blocks by SNAP output

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