databiosphere-website

A place to collect content for a data biosphere website. Right now this is just a template and has no content.

Hugo-based Data Biosphere Website

This uses Hugo which lets us write content in Markdown and apply themes to get a pretty website.

Organization

Things we want to touch on in the website:

• vision, mission... Apache for biomedical research
  • diagram: updated version of the arch diagram
  • who's a part of Data Biosphere
  • join us, learn more
• implementations
  • modules and data environments
  • diagram: examples in practice
  • datasets connected with the implementations
• Who benefits from the Data Biosphere?
  • Funders - efficiency, repository of reusable vetted components
  • Data Creators & Stewards - off-the-shelf standards based interoperabile components
  • Tool Developers - distribution platform that supports open source licenses
  • Researchers (Consumers) - trusted components that support the community. Share my work with like-minded researchers
  • Public? Cloud Vendors? System Integrators? Others? be able to speak to the benefits for other groups too
• Getting involved, how we add new groups/projects/companies/etc.

Next steps:

• get happy with the outline above
• Brian to make placeholders for the above, work on auto-deployment
• Danielle to help give feedback on the template and suggest changes to layout/images, graphics
• Sean and all of us helping to refine and get feedback on the site from PIs and others... fill in gaps we have right now

Automatic Deployment

This repo is setup to automatically build on TravisCI and deploy to GitHub pages. This means any changes you make to the files here will automatically deployed to https://databiosphere.github.io/databiosphere-website/

Install

Setup on a mac:

brew install hugo

Start Server

cd databiosphere
hugo server

And view the site on http://localhost:1313/

Creating the Site

This is already done for you but this is how I did it:

brew install hugo
hugo new site databiosphere
cd databiosphere

# Clone the Fresh theme
git clone https://github.com/StefMa/hugo-fresh themes/hugo-fresh

# Remove the default config
rm config.toml

# Fetch the example config
curl -O https://raw.githubusercontent.com/StefMa/hugo-fresh/master/exampleSite/config.yaml

# Run the site locally
hugo server

# Open the site in your browser
open http://localhost:1313

Useful References

I found the following very helpful when setting this up:

• How to create a website like freshswift.net using Hugo, Travis CI, and GitHub Pages
• Hugo, Github, Travis: a step in continuous deployment!
• this site layout is based on the Hugo Fresh theme