docs: update wiki documentation for agent tools system and recent features - Add comprehensive Agent-Tools.md documentation - Update Getting-Started.md with tools section and new config options - Update Command-Reference.md with /tools and /agent commands - Update Configuration.md with tool/agent settings and correct theme list - Update Session-Management.md with new features (rename, bulk delete, --resume) - Update Troubleshooting.md with tool/agent troubleshooting section - Update Development-Guide.md with current project structure and status - Update Home.md with latest features and new documentation links - Fix theme documentation to reflect actual available themes

djvolz committed Jul 8, 2025