update devel #21
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* add the pow_exp kernel and tested * all fixes * resolve threads plus some modifications * Fix cuda * fix for linking cuda * fix: hicma modifactions * try fixing Jenkines * Adding R structure * fix:add doxygen in Jenkines * add test file for pow-exp kernel * test with -fpic * some modifications for HiCMA * updates * try 2 gpu devices * back to starsh * a potential fix to doxygen * roll back * test Rcpp * Fix Jenkines * fix errors * Updated in design * updates * all release issue without src checks * adding MakeFile * Updated MPI * Documentation * fix examples tests * modeling takes pointers * example for read and write data * fix: typpo in Initialize * fix passing numbers of theta * fix: performance of gsl * fix: GPU support * fix:mspe * updated devel * R branch init * tests:add r tests * fix tests * bug: in tlr * fix:tlr * fix Jenkines * fix: Jenkines in Documentation * minior updates * huge refactoring * full R * potential for tlr issue * updates in heavy tests * a fix for gpu in gaussian kernels * smalling tlr size * update sizes of heavy_tests * smalling size for gpu * minior changes * Huge refactoring in docs * resolve threads * fix MPI * resolve thread * updated R documentation * documentation and hardware changes * finalized documentations * minior change in Hardware * Ft test mpi mk (#6) * solve multi thread issue in MPI * Fix MPI tests with chameleon * Fixed HiCMA with MPI * update license * minior cleanings (#7) * v1.1.0 (#4) (#8) * add the pow_exp kernel and tested * all fixes * resolve threads plus some modifications * Fix cuda * fix for linking cuda * fix: hicma modifactions * try fixing Jenkines * Adding R structure * fix:add doxygen in Jenkines * add test file for pow-exp kernel * test with -fpic * some modifications for HiCMA * updates * try 2 gpu devices * back to starsh * a potential fix to doxygen * roll back * test Rcpp * Fix Jenkines * fix errors * Updated in design * updates * all release issue without src checks * adding MakeFile * Updated MPI * Documentation * fix examples tests * modeling takes pointers * example for read and write data * fix: typpo in Initialize * fix passing numbers of theta * fix: performance of gsl * fix: GPU support * fix:mspe * updated devel * R branch init * tests:add r tests * fix tests * bug: in tlr * fix:tlr * fix Jenkines * fix: Jenkines in Documentation * minior updates * huge refactoring * full R * potential for tlr issue * updates in heavy tests * a fix for gpu in gaussian kernels * smalling tlr size * update sizes of heavy_tests * smalling size for gpu * minior changes * Huge refactoring in docs * resolve threads * fix MPI * resolve thread * updated R documentation * documentation and hardware changes * finalized documentations * minior change in Hardware * Ft test mpi mk (#6) * solve multi thread issue in MPI * Fix MPI tests with chameleon * Fixed HiCMA with MPI * update license * minior cleanings (#7) --------- Co-authored-by: Sameh M. Abdulah <abdullsm@kw60194.kaust.edu.sa> Co-authored-by: Mahmoud Karargy <x_karargma@almaha.kaust.edu.sa> * Fix P & Q * updates in R (#9) * Fix error in R * Fix using of openblas (#16) --------- Co-authored-by: Sameh M. Abdulah <abdullsm@kw60194.kaust.edu.sa> Co-authored-by: Mahmoud Karargy <x_karargma@almaha.kaust.edu.sa>
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Feb 25, 2025
* add the pow_exp kernel and tested * all fixes * resolve threads plus some modifications * Fix cuda * fix for linking cuda * fix: hicma modifactions * try fixing Jenkines * Adding R structure * fix:add doxygen in Jenkines * add test file for pow-exp kernel * test with -fpic * some modifications for HiCMA * updates * try 2 gpu devices * back to starsh * a potential fix to doxygen * roll back * test Rcpp * Fix Jenkines * fix errors * Updated in design * updates * all release issue without src checks * adding MakeFile * Updated MPI * Documentation * fix examples tests * modeling takes pointers * example for read and write data * fix: typpo in Initialize * fix passing numbers of theta * fix: performance of gsl * fix: GPU support * fix:mspe * updated devel * R branch init * tests:add r tests * fix tests * bug: in tlr * fix:tlr * fix Jenkines * fix: Jenkines in Documentation * minior updates * huge refactoring * full R * potential for tlr issue * updates in heavy tests * a fix for gpu in gaussian kernels * smalling tlr size * update sizes of heavy_tests * smalling size for gpu * minior changes * Huge refactoring in docs * resolve threads * fix MPI * resolve thread * updated R documentation * documentation and hardware changes * finalized documentations * minior change in Hardware * Ft test mpi mk (#6) * solve multi thread issue in MPI * Fix MPI tests with chameleon * Fixed HiCMA with MPI * update license * minior cleanings (#7) * v1.1.0 (#4) (#8) * add the pow_exp kernel and tested * all fixes * resolve threads plus some modifications * Fix cuda * fix for linking cuda * fix: hicma modifactions * try fixing Jenkines * Adding R structure * fix:add doxygen in Jenkines * add test file for pow-exp kernel * test with -fpic * some modifications for HiCMA * updates * try 2 gpu devices * back to starsh * a potential fix to doxygen * roll back * test Rcpp * Fix Jenkines * fix errors * Updated in design * updates * all release issue without src checks * adding MakeFile * Updated MPI * Documentation * fix examples tests * modeling takes pointers * example for read and write data * fix: typpo in Initialize * fix passing numbers of theta * fix: performance of gsl * fix: GPU support * fix:mspe * updated devel * R branch init * tests:add r tests * fix tests * bug: in tlr * fix:tlr * fix Jenkines * fix: Jenkines in Documentation * minior updates * huge refactoring * full R * potential for tlr issue * updates in heavy tests * a fix for gpu in gaussian kernels * smalling tlr size * update sizes of heavy_tests * smalling size for gpu * minior changes * Huge refactoring in docs * resolve threads * fix MPI * resolve thread * updated R documentation * documentation and hardware changes * finalized documentations * minior change in Hardware * Ft test mpi mk (#6) * solve multi thread issue in MPI * Fix MPI tests with chameleon * Fixed HiCMA with MPI * update license * minior cleanings (#7) --------- Co-authored-by: Sameh M. Abdulah <abdullsm@kw60194.kaust.edu.sa> Co-authored-by: Mahmoud Karargy <x_karargma@almaha.kaust.edu.sa> * Fix P & Q * updates in R (#9) * Fix error in R * Fix using of openblas (#16) * Update main (#19) * V1.1.1 (#15) * add the pow_exp kernel and tested * all fixes * resolve threads plus some modifications * Fix cuda * fix for linking cuda * fix: hicma modifactions * try fixing Jenkines * Adding R structure * fix:add doxygen in Jenkines * add test file for pow-exp kernel * test with -fpic * some modifications for HiCMA * updates * try 2 gpu devices * back to starsh * a potential fix to doxygen * roll back * test Rcpp * Fix Jenkines * fix errors * Updated in design * updates * all release issue without src checks * adding MakeFile * Updated MPI * Documentation * fix examples tests * modeling takes pointers * example for read and write data * fix: typpo in Initialize * fix passing numbers of theta * fix: performance of gsl * fix: GPU support * fix:mspe * updated devel * R branch init * tests:add r tests * fix tests * bug: in tlr * fix:tlr * fix Jenkines * fix: Jenkines in Documentation * minior updates * huge refactoring * full R * potential for tlr issue * updates in heavy tests * a fix for gpu in gaussian kernels * smalling tlr size * update sizes of heavy_tests * smalling size for gpu * minior changes * Huge refactoring in docs * resolve threads * fix MPI * resolve thread * updated R documentation * documentation and hardware changes * finalized documentations * minior change in Hardware * Ft test mpi mk (#6) * solve multi thread issue in MPI * Fix MPI tests with chameleon * Fixed HiCMA with MPI * update license * minior cleanings (#7) * v1.1.0 (#4) (#8) * add the pow_exp kernel and tested * all fixes * resolve threads plus some modifications * Fix cuda * fix for linking cuda * fix: hicma modifactions * try fixing Jenkines * Adding R structure * fix:add doxygen in Jenkines * add test file for pow-exp kernel * test with -fpic * some modifications for HiCMA * updates * try 2 gpu devices * back to starsh * a potential fix to doxygen * roll back * test Rcpp * Fix Jenkines * fix errors * Updated in design * updates * all release issue without src checks * adding MakeFile * Updated MPI * Documentation * fix examples tests * modeling takes pointers * example for read and write data * fix: typpo in Initialize * fix passing numbers of theta * fix: performance of gsl * fix: GPU support * fix:mspe * updated devel * R branch init * tests:add r tests * fix tests * bug: in tlr * fix:tlr * fix Jenkines * fix: Jenkines in Documentation * minior updates * huge refactoring * full R * potential for tlr issue * updates in heavy tests * a fix for gpu in gaussian kernels * smalling tlr size * update sizes of heavy_tests * smalling size for gpu * minior changes * Huge refactoring in docs * resolve threads * fix MPI * resolve thread * updated R documentation * documentation and hardware changes * finalized documentations * minior change in Hardware * Ft test mpi mk (#6) * solve multi thread issue in MPI * Fix MPI tests with chameleon * Fixed HiCMA with MPI * update license * minior cleanings (#7) --------- Co-authored-by: Sameh M. Abdulah <abdullsm@kw60194.kaust.edu.sa> Co-authored-by: Mahmoud Karargy <x_karargma@almaha.kaust.edu.sa> * Fix P & Q * updates in R (#9) * Fix error in R * Fix using of openblas (#16) --------- Co-authored-by: Sameh M. Abdulah <abdullsm@kw60194.kaust.edu.sa> Co-authored-by: Mahmoud Karargy <x_karargma@almaha.kaust.edu.sa> * V1.1.2 (#17) * Fixed cmake installation and add requirements in ReadME --------- Co-authored-by: Sameh M. Abdulah <abdullsm@kw60194.kaust.edu.sa> Co-authored-by: Mahmoud Karargy <x_karargma@almaha.kaust.edu.sa> * Fix for zero values in locations (#20) * update devel (#21) * Fix tlr in R (#24) * V1.1.1 (#15) * add the pow_exp kernel and tested * all fixes * resolve threads plus some modifications * Fix cuda * fix for linking cuda * fix: hicma modifactions * try fixing Jenkines * Adding R structure * fix:add doxygen in Jenkines * add test file for pow-exp kernel * test with -fpic * some modifications for HiCMA * updates * try 2 gpu devices * back to starsh * a potential fix to doxygen * roll back * test Rcpp * Fix Jenkines * fix errors * Updated in design * updates * all release issue without src checks * adding MakeFile * Updated MPI * Documentation * fix examples tests * modeling takes pointers * example for read and write data * fix: typpo in Initialize * fix passing numbers of theta * fix: performance of gsl * fix: GPU support * fix:mspe * updated devel * R branch init * tests:add r tests * fix tests * bug: in tlr * fix:tlr * fix Jenkines * fix: Jenkines in Documentation * minior updates * huge refactoring * full R * potential for tlr issue * updates in heavy tests * a fix for gpu in gaussian kernels * smalling tlr size * update sizes of heavy_tests * smalling size for gpu * minior changes * Huge refactoring in docs * resolve threads * fix MPI * resolve thread * updated R documentation * documentation and hardware changes * finalized documentations * minior change in Hardware * Ft test mpi mk (#6) * solve multi thread issue in MPI * Fix MPI tests with chameleon * Fixed HiCMA with MPI * update license * minior cleanings (#7) * v1.1.0 (#4) (#8) * add the pow_exp kernel and tested * all fixes * resolve threads plus some modifications * Fix cuda * fix for linking cuda * fix: hicma modifactions * try fixing Jenkines * Adding R structure * fix:add doxygen in Jenkines * add test file for pow-exp kernel * test with -fpic * some modifications for HiCMA * updates * try 2 gpu devices * back to starsh * a potential fix to doxygen * roll back * test Rcpp * Fix Jenkines * fix errors * Updated in design * updates * all release issue without src checks * adding MakeFile * Updated MPI * Documentation * fix examples tests * modeling takes pointers * example for read and write data * fix: typpo in Initialize * fix passing numbers of theta * fix: performance of gsl * fix: GPU support * fix:mspe * updated devel * R branch init * tests:add r tests * fix tests * bug: in tlr * fix:tlr * fix Jenkines * fix: Jenkines in Documentation * minior updates * huge refactoring * full R * potential for tlr issue * updates in heavy tests * a fix for gpu in gaussian kernels * smalling tlr size * update sizes of heavy_tests * smalling size for gpu * minior changes * Huge refactoring in docs * resolve threads * fix MPI * resolve thread * updated R documentation * documentation and hardware changes * finalized documentations * minior change in Hardware * Ft test mpi mk (#6) * solve multi thread issue in MPI * Fix MPI tests with chameleon * Fixed HiCMA with MPI * update license * minior cleanings (#7) --------- Co-authored-by: Sameh M. Abdulah <abdullsm@kw60194.kaust.edu.sa> Co-authored-by: Mahmoud Karargy <x_karargma@almaha.kaust.edu.sa> * Fix P & Q * updates in R (#9) * Fix error in R * Fix using of openblas (#16) --------- Co-authored-by: Sameh M. Abdulah <abdullsm@kw60194.kaust.edu.sa> Co-authored-by: Mahmoud Karargy <x_karargma@almaha.kaust.edu.sa> * V1.1.2 (#17) * Fixed cmake installation and add requirements in ReadME * All fixes for hicma * Modify README.md (#22) * modify README.md * more edits to README.md * more minor edits * more minor edits to the R example * fix the R code * remove empty line --------- Co-authored-by: Sameh M. Abdulah <abdullsm@kw60194.kaust.edu.sa> Co-authored-by: Mahmoud Karargy <x_karargma@almaha.kaust.edu.sa> Co-authored-by: Sameh Abdulah <23186151+SAbdulah@users.noreply.github.com> * Ft add accuracy tlr (#26) * V1.1.1 (#15) * add the pow_exp kernel and tested * all fixes * resolve threads plus some modifications * Fix cuda * fix for linking cuda * fix: hicma modifactions * try fixing Jenkines * Adding R structure * fix:add doxygen in Jenkines * add test file for pow-exp kernel * test with -fpic * some modifications for HiCMA * updates * try 2 gpu devices * back to starsh * a potential fix to doxygen * roll back * test Rcpp * Fix Jenkines * fix errors * Updated in design * updates * all release issue without src checks * adding MakeFile * Updated MPI * Documentation * fix examples tests * modeling takes pointers * example for read and write data * fix: typpo in Initialize * fix passing numbers of theta * fix: performance of gsl * fix: GPU support * fix:mspe * updated devel * R branch init * tests:add r tests * fix tests * bug: in tlr * fix:tlr * fix Jenkines * fix: Jenkines in Documentation * minior updates * huge refactoring * full R * potential for tlr issue * updates in heavy tests * a fix for gpu in gaussian kernels * smalling tlr size * update sizes of heavy_tests * smalling size for gpu * minior changes * Huge refactoring in docs * resolve threads * fix MPI * resolve thread * updated R documentation * documentation and hardware changes * finalized documentations * minior change in Hardware * Ft test mpi mk (#6) * solve multi thread issue in MPI * Fix MPI tests with chameleon * Fixed HiCMA with MPI * update license * minior cleanings (#7) * v1.1.0 (#4) (#8) * add the pow_exp kernel and tested * all fixes * resolve threads plus some modifications * Fix cuda * fix for linking cuda * fix: hicma modifactions * try fixing Jenkines * Adding R structure * fix:add doxygen in Jenkines * add test file for pow-exp kernel * test with -fpic * some modifications for HiCMA * updates * try 2 gpu devices * back to starsh * a potential fix to doxygen * roll back * test Rcpp * Fix Jenkines * fix errors * Updated in design * updates * all release issue without src checks * adding MakeFile * Updated MPI * Documentation * fix examples tests * modeling takes pointers * example for read and write data * fix: typpo in Initialize * fix passing numbers of theta * fix: performance of gsl * fix: GPU support * fix:mspe * updated devel * R branch init * tests:add r tests * fix tests * bug: in tlr * fix:tlr * fix Jenkines * fix: Jenkines in Documentation * minior updates * huge refactoring * full R * potential for tlr issue * updates in heavy tests * a fix for gpu in gaussian kernels * smalling tlr size * update sizes of heavy_tests * smalling size for gpu * minior changes * Huge refactoring in docs * resolve threads * fix MPI * resolve thread * updated R documentation * documentation and hardware changes * finalized documentations * minior change in Hardware * Ft test mpi mk (#6) * solve multi thread issue in MPI * Fix MPI tests with chameleon * Fixed HiCMA with MPI * update license * minior cleanings (#7) --------- Co-authored-by: Sameh M. Abdulah <abdullsm@kw60194.kaust.edu.sa> Co-authored-by: Mahmoud Karargy <x_karargma@almaha.kaust.edu.sa> * Fix P & Q * updates in R (#9) * Fix error in R * Fix using of openblas (#16) --------- Co-authored-by: Sameh M. Abdulah <abdullsm@kw60194.kaust.edu.sa> Co-authored-by: Mahmoud Karargy <x_karargma@almaha.kaust.edu.sa> * V1.1.2 (#17) * Fixed cmake installation and add requirements in ReadME * All fixes for hicma * Modify README.md (#22) * modify README.md * more edits to README.md * more minor edits * more minor edits to the R example * fix the R code * remove empty line * debuging prints * cleaner version --------- Co-authored-by: Sameh M. Abdulah <abdullsm@kw60194.kaust.edu.sa> Co-authored-by: Mahmoud Karargy <x_karargma@almaha.kaust.edu.sa> Co-authored-by: Sameh Abdulah <23186151+SAbdulah@users.noreply.github.com> * change value of acc * update params values --------- Co-authored-by: Sameh M. Abdulah <abdullsm@kw60194.kaust.edu.sa> Co-authored-by: Mahmoud Karargy <x_karargma@almaha.kaust.edu.sa> Co-authored-by: Sameh Abdulah <23186151+SAbdulah@users.noreply.github.com>
mahmoudElkarargyBS
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Nov 13, 2025
* add the pow_exp kernel and tested * all fixes * resolve threads plus some modifications * Fix cuda * fix for linking cuda * fix: hicma modifactions * try fixing Jenkines * Adding R structure * fix:add doxygen in Jenkines * add test file for pow-exp kernel * test with -fpic * some modifications for HiCMA * updates * try 2 gpu devices * back to starsh * a potential fix to doxygen * roll back * test Rcpp * Fix Jenkines * fix errors * Updated in design * updates * all release issue without src checks * adding MakeFile * Updated MPI * Documentation * fix examples tests * modeling takes pointers * example for read and write data * fix: typpo in Initialize * fix passing numbers of theta * fix: performance of gsl * fix: GPU support * fix:mspe * updated devel * R branch init * tests:add r tests * fix tests * bug: in tlr * fix:tlr * fix Jenkines * fix: Jenkines in Documentation * minior updates * huge refactoring * full R * potential for tlr issue * updates in heavy tests * a fix for gpu in gaussian kernels * smalling tlr size * update sizes of heavy_tests * smalling size for gpu * minior changes * Huge refactoring in docs * resolve threads * fix MPI * resolve thread * updated R documentation * documentation and hardware changes * finalized documentations * minior change in Hardware * Ft test mpi mk (#6) * solve multi thread issue in MPI * Fix MPI tests with chameleon * Fixed HiCMA with MPI * update license * minior cleanings (#7) * v1.1.0 (#4) (#8) * add the pow_exp kernel and tested * all fixes * resolve threads plus some modifications * Fix cuda * fix for linking cuda * fix: hicma modifactions * try fixing Jenkines * Adding R structure * fix:add doxygen in Jenkines * add test file for pow-exp kernel * test with -fpic * some modifications for HiCMA * updates * try 2 gpu devices * back to starsh * a potential fix to doxygen * roll back * test Rcpp * Fix Jenkines * fix errors * Updated in design * updates * all release issue without src checks * adding MakeFile * Updated MPI * Documentation * fix examples tests * modeling takes pointers * example for read and write data * fix: typpo in Initialize * fix passing numbers of theta * fix: performance of gsl * fix: GPU support * fix:mspe * updated devel * R branch init * tests:add r tests * fix tests * bug: in tlr * fix:tlr * fix Jenkines * fix: Jenkines in Documentation * minior updates * huge refactoring * full R * potential for tlr issue * updates in heavy tests * a fix for gpu in gaussian kernels * smalling tlr size * update sizes of heavy_tests * smalling size for gpu * minior changes * Huge refactoring in docs * resolve threads * fix MPI * resolve thread * updated R documentation * documentation and hardware changes * finalized documentations * minior change in Hardware * Ft test mpi mk (#6) * solve multi thread issue in MPI * Fix MPI tests with chameleon * Fixed HiCMA with MPI * update license * minior cleanings (#7) --------- Co-authored-by: Sameh M. Abdulah <abdullsm@kw60194.kaust.edu.sa> Co-authored-by: Mahmoud Karargy <x_karargma@almaha.kaust.edu.sa> * Fix P & Q * updates in R (#9) * Fix error in R * Fix using of openblas (#16) * Update main (#19) * V1.1.1 (#15) * add the pow_exp kernel and tested * all fixes * resolve threads plus some modifications * Fix cuda * fix for linking cuda * fix: hicma modifactions * try fixing Jenkines * Adding R structure * fix:add doxygen in Jenkines * add test file for pow-exp kernel * test with -fpic * some modifications for HiCMA * updates * try 2 gpu devices * back to starsh * a potential fix to doxygen * roll back * test Rcpp * Fix Jenkines * fix errors * Updated in design * updates * all release issue without src checks * adding MakeFile * Updated MPI * Documentation * fix examples tests * modeling takes pointers * example for read and write data * fix: typpo in Initialize * fix passing numbers of theta * fix: performance of gsl * fix: GPU support * fix:mspe * updated devel * R branch init * tests:add r tests * fix tests * bug: in tlr * fix:tlr * fix Jenkines * fix: Jenkines in Documentation * minior updates * huge refactoring * full R * potential for tlr issue * updates in heavy tests * a fix for gpu in gaussian kernels * smalling tlr size * update sizes of heavy_tests * smalling size for gpu * minior changes * Huge refactoring in docs * resolve threads * fix MPI * resolve thread * updated R documentation * documentation and hardware changes * finalized documentations * minior change in Hardware * Ft test mpi mk (#6) * solve multi thread issue in MPI * Fix MPI tests with chameleon * Fixed HiCMA with MPI * update license * minior cleanings (#7) * v1.1.0 (#4) (#8) * add the pow_exp kernel and tested * all fixes * resolve threads plus some modifications * Fix cuda * fix for linking cuda * fix: hicma modifactions * try fixing Jenkines * Adding R structure * fix:add doxygen in Jenkines * add test file for pow-exp kernel * test with -fpic * some modifications for HiCMA * updates * try 2 gpu devices * back to starsh * a potential fix to doxygen * roll back * test Rcpp * Fix Jenkines * fix errors * Updated in design * updates * all release issue without src checks * adding MakeFile * Updated MPI * Documentation * fix examples tests * modeling takes pointers * example for read and write data * fix: typpo in Initialize * fix passing numbers of theta * fix: performance of gsl * fix: GPU support * fix:mspe * updated devel * R branch init * tests:add r tests * fix tests * bug: in tlr * fix:tlr * fix Jenkines * fix: Jenkines in Documentation * minior updates * huge refactoring * full R * potential for tlr issue * updates in heavy tests * a fix for gpu in gaussian kernels * smalling tlr size * update sizes of heavy_tests * smalling size for gpu * minior changes * Huge refactoring in docs * resolve threads * fix MPI * resolve thread * updated R documentation * documentation and hardware changes * finalized documentations * minior change in Hardware * Ft test mpi mk (#6) * solve multi thread issue in MPI * Fix MPI tests with chameleon * Fixed HiCMA with MPI * update license * minior cleanings (#7) --------- Co-authored-by: Sameh M. Abdulah <abdullsm@kw60194.kaust.edu.sa> Co-authored-by: Mahmoud Karargy <x_karargma@almaha.kaust.edu.sa> * Fix P & Q * updates in R (#9) * Fix error in R * Fix using of openblas (#16) --------- Co-authored-by: Sameh M. Abdulah <abdullsm@kw60194.kaust.edu.sa> Co-authored-by: Mahmoud Karargy <x_karargma@almaha.kaust.edu.sa> * V1.1.2 (#17) * Fixed cmake installation and add requirements in ReadME --------- Co-authored-by: Sameh M. Abdulah <abdullsm@kw60194.kaust.edu.sa> Co-authored-by: Mahmoud Karargy <x_karargma@almaha.kaust.edu.sa> * Fix for zero values in locations (#20) * update devel (#21) * Fix tlr in R (#24) * V1.1.1 (#15) * add the pow_exp kernel and tested * all fixes * resolve threads plus some modifications * Fix cuda * fix for linking cuda * fix: hicma modifactions * try fixing Jenkines * Adding R structure * fix:add doxygen in Jenkines * add test file for pow-exp kernel * test with -fpic * some modifications for HiCMA * updates * try 2 gpu devices * back to starsh * a potential fix to doxygen * roll back * test Rcpp * Fix Jenkines * fix errors * Updated in design * updates * all release issue without src checks * adding MakeFile * Updated MPI * Documentation * fix examples tests * modeling takes pointers * example for read and write data * fix: typpo in Initialize * fix passing numbers of theta * fix: performance of gsl * fix: GPU support * fix:mspe * updated devel * R branch init * tests:add r tests * fix tests * bug: in tlr * fix:tlr * fix Jenkines * fix: Jenkines in Documentation * minior updates * huge refactoring * full R * potential for tlr issue * updates in heavy tests * a fix for gpu in gaussian kernels * smalling tlr size * update sizes of heavy_tests * smalling size for gpu * minior changes * Huge refactoring in docs * resolve threads * fix MPI * resolve thread * updated R documentation * documentation and hardware changes * finalized documentations * minior change in Hardware * Ft test mpi mk (#6) * solve multi thread issue in MPI * Fix MPI tests with chameleon * Fixed HiCMA with MPI * update license * minior cleanings (#7) * v1.1.0 (#4) (#8) * add the pow_exp kernel and tested * all fixes * resolve threads plus some modifications * Fix cuda * fix for linking cuda * fix: hicma modifactions * try fixing Jenkines * Adding R structure * fix:add doxygen in Jenkines * add test file for pow-exp kernel * test with -fpic * some modifications for HiCMA * updates * try 2 gpu devices * back to starsh * a potential fix to doxygen * roll back * test Rcpp * Fix Jenkines * fix errors * Updated in design * updates * all release issue without src checks * adding MakeFile * Updated MPI * Documentation * fix examples tests * modeling takes pointers * example for read and write data * fix: typpo in Initialize * fix passing numbers of theta * fix: performance of gsl * fix: GPU support * fix:mspe * updated devel * R branch init * tests:add r tests * fix tests * bug: in tlr * fix:tlr * fix Jenkines * fix: Jenkines in Documentation * minior updates * huge refactoring * full R * potential for tlr issue * updates in heavy tests * a fix for gpu in gaussian kernels * smalling tlr size * update sizes of heavy_tests * smalling size for gpu * minior changes * Huge refactoring in docs * resolve threads * fix MPI * resolve thread * updated R documentation * documentation and hardware changes * finalized documentations * minior change in Hardware * Ft test mpi mk (#6) * solve multi thread issue in MPI * Fix MPI tests with chameleon * Fixed HiCMA with MPI * update license * minior cleanings (#7) --------- Co-authored-by: Sameh M. Abdulah <abdullsm@kw60194.kaust.edu.sa> Co-authored-by: Mahmoud Karargy <x_karargma@almaha.kaust.edu.sa> * Fix P & Q * updates in R (#9) * Fix error in R * Fix using of openblas (#16) --------- Co-authored-by: Sameh M. Abdulah <abdullsm@kw60194.kaust.edu.sa> Co-authored-by: Mahmoud Karargy <x_karargma@almaha.kaust.edu.sa> * V1.1.2 (#17) * Fixed cmake installation and add requirements in ReadME * All fixes for hicma * Modify README.md (#22) * modify README.md * more edits to README.md * more minor edits * more minor edits to the R example * fix the R code * remove empty line --------- Co-authored-by: Sameh M. Abdulah <abdullsm@kw60194.kaust.edu.sa> Co-authored-by: Mahmoud Karargy <x_karargma@almaha.kaust.edu.sa> Co-authored-by: Sameh Abdulah <23186151+SAbdulah@users.noreply.github.com> * Ft add accuracy tlr (#26) * V1.1.1 (#15) * add the pow_exp kernel and tested * all fixes * resolve threads plus some modifications * Fix cuda * fix for linking cuda * fix: hicma modifactions * try fixing Jenkines * Adding R structure * fix:add doxygen in Jenkines * add test file for pow-exp kernel * test with -fpic * some modifications for HiCMA * updates * try 2 gpu devices * back to starsh * a potential fix to doxygen * roll back * test Rcpp * Fix Jenkines * fix errors * Updated in design * updates * all release issue without src checks * adding MakeFile * Updated MPI * Documentation * fix examples tests * modeling takes pointers * example for read and write data * fix: typpo in Initialize * fix passing numbers of theta * fix: performance of gsl * fix: GPU support * fix:mspe * updated devel * R branch init * tests:add r tests * fix tests * bug: in tlr * fix:tlr * fix Jenkines * fix: Jenkines in Documentation * minior updates * huge refactoring * full R * potential for tlr issue * updates in heavy tests * a fix for gpu in gaussian kernels * smalling tlr size * update sizes of heavy_tests * smalling size for gpu * minior changes * Huge refactoring in docs * resolve threads * fix MPI * resolve thread * updated R documentation * documentation and hardware changes * finalized documentations * minior change in Hardware * Ft test mpi mk (#6) * solve multi thread issue in MPI * Fix MPI tests with chameleon * Fixed HiCMA with MPI * update license * minior cleanings (#7) * v1.1.0 (#4) (#8) * add the pow_exp kernel and tested * all fixes * resolve threads plus some modifications * Fix cuda * fix for linking cuda * fix: hicma modifactions * try fixing Jenkines * Adding R structure * fix:add doxygen in Jenkines * add test file for pow-exp kernel * test with -fpic * some modifications for HiCMA * updates * try 2 gpu devices * back to starsh * a potential fix to doxygen * roll back * test Rcpp * Fix Jenkines * fix errors * Updated in design * updates * all release issue without src checks * adding MakeFile * Updated MPI * Documentation * fix examples tests * modeling takes pointers * example for read and write data * fix: typpo in Initialize * fix passing numbers of theta * fix: performance of gsl * fix: GPU support * fix:mspe * updated devel * R branch init * tests:add r tests * fix tests * bug: in tlr * fix:tlr * fix Jenkines * fix: Jenkines in Documentation * minior updates * huge refactoring * full R * potential for tlr issue * updates in heavy tests * a fix for gpu in gaussian kernels * smalling tlr size * update sizes of heavy_tests * smalling size for gpu * minior changes * Huge refactoring in docs * resolve threads * fix MPI * resolve thread * updated R documentation * documentation and hardware changes * finalized documentations * minior change in Hardware * Ft test mpi mk (#6) * solve multi thread issue in MPI * Fix MPI tests with chameleon * Fixed HiCMA with MPI * update license * minior cleanings (#7) --------- Co-authored-by: Sameh M. Abdulah <abdullsm@kw60194.kaust.edu.sa> Co-authored-by: Mahmoud Karargy <x_karargma@almaha.kaust.edu.sa> * Fix P & Q * updates in R (#9) * Fix error in R * Fix using of openblas (#16) --------- Co-authored-by: Sameh M. Abdulah <abdullsm@kw60194.kaust.edu.sa> Co-authored-by: Mahmoud Karargy <x_karargma@almaha.kaust.edu.sa> * V1.1.2 (#17) * Fixed cmake installation and add requirements in ReadME * All fixes for hicma * Modify README.md (#22) * modify README.md * more edits to README.md * more minor edits * more minor edits to the R example * fix the R code * remove empty line * debuging prints * cleaner version --------- Co-authored-by: Sameh M. Abdulah <abdullsm@kw60194.kaust.edu.sa> Co-authored-by: Mahmoud Karargy <x_karargma@almaha.kaust.edu.sa> Co-authored-by: Sameh Abdulah <23186151+SAbdulah@users.noreply.github.com> * change value of acc * update params values * Use random seed by default unless user specifies one (#29) # updated devel branch to match master and also fixed tests * Fix tlr bug fix om (#30) * TLR Issue resolved -- zgytlr changed to dgytlr and accuracy calculation fixed * alignment and reformatting --------- Co-authored-by: mahmoud <mahmoud.elkarargy@brightskiesinc.com> * added missing header to configurations for gcc v14.1.0 support (#38) * requirment for CUDA <12 * add requirments in README * V2.0.0 (#44) * integrate netcdf * stage zero working * update root cmake * add netcdf reading prints and update readme with example * improve csv file writing * add forcing data * added parsec support * added syncronized file writing and lat-lon parameters * Cleaned stage-zero parsec generator and added the full pipeline script * Fixed data generator for parsec loader * added parsec operations support * add new synthetic generator and parsec jdf files and configurations * fixed configurations and hardware parameters * add climate emulator flag in configure and fix stage-zero starpu version * add climate emulator flag in configure and fix stage-zero starpu version * add starpu generator * add starpu generator * guard Stage Zero API functions with USE_CLIMATE_EMULATOR flag * minior edits * climate emulator flag * remove example guards and minor stage zero fix * resolve threads * adding author and versions * minor fixes renaming mean trend removal * updating handout --------- Co-authored-by: Mahmoud ElKarargy <mahmoud.elkarargy@brightskiesinc.com> --------- Co-authored-by: Sameh M. Abdulah <abdullsm@kw60194.kaust.edu.sa> Co-authored-by: Mahmoud Karargy <x_karargma@almaha.kaust.edu.sa> Co-authored-by: Sameh Abdulah <23186151+SAbdulah@users.noreply.github.com> Co-authored-by: OmarHeshamMarzouk <90141678+omar-hmarzouk@users.noreply.github.com> Co-authored-by: Ali Hakam <132768426+alihakam830@users.noreply.github.com>
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